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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
candidate regulatory elements
1
accessible chromatin
1
binding sites
1
chromatin state
1
histone modifications
Annotation Category
4
cis-regulatory elements
3
Target gene links
Annotation type Category
4
ChIP-seq
3
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
6
bed bed3+
1
bed bed9
File set status
7
released
Genome assembly (visualization)
7
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
6
in vitro differentiated cells
1
stem cell
Biosample term
131
monocyte
59
HeLa-S3
53
H1-hESC
51
heart
50
kidney
46
neural progenitor cell
46
stomach
44
CD8-positive, alpha-beta T cell
44
islet of Langerhans
42
brain
41
A549
36
liver
35
lung
34
K562
34
adrenal gland
34
placenta
34
small intestine
33
muscle of arm
33
retina
32
fibroblast
32
macrophage
30
B cell
30
muscle of leg
29
large intestine
28
thymus
26
common myeloid progenitor, CD34-positive
26
left lung
25
muscle of back
24
hematopoietic multipotent progenitor cell
23
CD14-positive monocyte
23
adipocyte
23
adipose tissue
23
regulatory T cell
23
right lung
23
smooth muscle cell
22
right kidney
21
heart left ventricle
21
pericyte cell
21
spinal cord
20
breast cancer cell
20
renal pelvis
19
HFFc6
19
T cell
19
renal cortex interstitium
19
spleen
18
CD4-positive, alpha-beta memory T cell
18
embryonic stem cell
18
left kidney
18
subcutaneous adipose tissue
18
tibial nerve
17
MCF-7
17
T-helper 1 cell
17
natural killer cell
16
induced pluripotent stem cell
15
HepG2
15
T-helper 17 cell
15
astrocyte
15
caudate nucleus
15
coronary artery
15
mesenchymal stem cell
15
osteoblast
14
CD8-positive, alpha-beta memory T cell
14
GM12878
14
body of pancreas
14
trophoblast cell
13
excitatory neuron
13
fibroblast of cardiac tissue
13
pancreas
13
right atrium auricular region
12
lymphoblastoid cell line
12
mononuclear cell
12
neuroblastoma cell
12
sigmoid colon
12
skeletal muscle myoblast
12
tibial artery
11
T-helper 2 cell
11
ascending aorta
11
erythroblast
11
foreskin fibroblast
11
frontal cortex
11
neutrophil
11
ovary
11
psoas muscle
11
skeletal muscle satellite cell
11
substantia nigra
11
thyroid gland
10
Rhabdomyosarcoma
10
cardiac muscle cell
10
cerebellum
10
fibroblast of lung
10
gastric cancer cell
10
heart right ventricle
10
omental fat pad
10
pancreatic stellate cell
10
progenitor cell of endocrine pancreas
10
putamen
10
skeletal muscle tissue
10
testis
9
H9
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
left cardiac atrium
9
liposarcoma
9
transverse colon
8
Ammon's horn
8
B-lymphoblastoid cell line
8
fibroblast cell line
8
fibroblast of dermis
8
gastrocnemius medialis
8
layer of hippocampus
8
lymphocyte
8
pituitary stalk
8
prostate gland
8
skeletal muscle fiber
8
skin fibroblast
8
temporal lobe
7
CD4-positive helper T cell
7
CD4-positive, alpha-beta T cell
7
GM19240
7
IMR-90
7
Jurkat
7
aorta
7
cardiomyocytes (cardiac muscle cell)
7
endocrine pancreas
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
hepatic stellate cell
7
mature neutrophil
7
memory B cell
7
mesendoderm
7
muscle of trunk
7
naive thymus-derived CD4-positive, alpha-beta T cell
7
neuronal stem cell
7
upper lobe of left lung
6
22Rv1
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
Caco-2 cell
6
Chondroid Chordoma
6
GM06990
6
GM12864
6
GM12865
6
GM19238
6
GM19239
6
HAP-1
6
HEK293
6
HL-60
6
HT-29
6
HUES8
6
KARPAS-422 cell
6
LoVo cell
6
Peyer's patch
6
WERI-Rb-1
6
cardiac precursors (cardiac muscle cell)
6
chondrocyte
6
endodermal cell
6
hESC cell
6
iPSC derived cell line
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neuroblastoma cell line
6
plasma cell
6
smooth muscle cell of the coronary artery
6
thoracic aorta
6
trophoblast
6
type I muscle cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
CD1c-positive myeloid dendritic cell
5
CMK
5
Classical Dendritic Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
CyT49
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Ewing sarcoma
5
Fibroblast
5
GM12875
5
GM12891
5
GM12892
5
GM18507
5
GM23248
5
H7-hESC
5
HCT-116 cell
5
HuH-7
5
LHCN-M2
5
MG63
5
Non-Classical Monocyte
5
OCI-LY7
5
PC-9
5
acute myeloid leukemia
5
amygdala
5
chorion membrane
Life stage
2
embryonic
Date released
2
February, 2021
2
September, 2022
1
June, 2020
1
March, 2020
1
May, 2021
Software used
3
macs
1
abc
1
chromhmm
1
nospecificsoft_customcode
1
r
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
annotation_type!
candidate regulatory elements
month_released!
January, 2020
organ_slims!
epithelium
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP