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Citing CMDGA
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Annotation type
candidate regulatory elements
3
chromatin state
2
target gene predictions
Annotation Category
3
cis-regulatory elements
2
Target gene links
Annotation type Category
5
ChIP-seq
2
DNase-seq
Available data
3
bed bed3+
2
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
2
GRCh38
Organism
5
Homo sapiens
Biosample type
5
tissue
Biosample term
29
large intestine
13
sigmoid colon
11
transverse colon
8
colon epithelial cell
6
HT-29
6
colonic mucosa
5
SW480
5
mucosa of rectum
4
HCT-116 cell
4
HCT116
4
muscle layer of colon
3
RKO
3
rectum smooth muscle tissue
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
Organ
5
intestine
5
large intestine
Life stage
4
adult
Date released
4
September, 2022
1
August, 2017
Software used
3
chromhmm
2
r
Lab
4
AMP-T2D consortium
1
Stephen Parker, UMich
Project
5
AMP
RFA
5
AMP
annotation_type!
candidate regulatory elements
organ_slims!
ureter
urinary bladder
Showing 5 of 5 results
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Download
FileSet
DSR239RIF
released
Annotation file set
: Target gene predictions for BSS01283 mucosa of rectum from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR280IFY
released
Annotation file set
: Target gene predictions for BSS01282 mucosa of rectum from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR180ELA
released
Annotation file set
: Chromatin states for BSS01283 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR346ASL
released
Annotation file set
: Chromatin states for BSS01282 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR362251
released
Annotation file set
: ChromHMM 13-state model for Rectal mucosa
Lab:
Stephen Parker, UMich
Project:
AMP