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Schema
Citing CMDGA
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Annotation type
1
target gene predictions
Annotation Category
1
Target gene links
Annotation type Category
1
Capture-C
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
stem cell
Biosample term
131
monocyte
59
HeLa-S3
51
heart
50
kidney
46
neural progenitor cell
46
stomach
44
CD8-positive, alpha-beta T cell
44
islet of Langerhans
42
brain
41
A549
41
endothelial cell
36
liver
35
lung
34
K562
34
adrenal gland
34
placenta
34
small intestine
33
hepatocyte
33
muscle of arm
33
retina
32
fibroblast
32
macrophage
30
B cell
30
muscle of leg
29
large intestine
28
thymus
26
common myeloid progenitor, CD34-positive
26
left lung
25
muscle of back
25
pancreatic ductal cell
24
hematopoietic multipotent progenitor cell
23
CD14-positive monocyte
23
EndoC_BH1
23
adipocyte
23
adipose tissue
23
regulatory T cell
23
right lung
23
smooth muscle cell
22
right kidney
21
heart left ventricle
21
pericyte cell
21
spinal cord
20
breast cancer cell
20
epithelial cell of proximal tubule
20
pigmented layer of retina
20
renal pelvis
19
T cell
19
renal cortex interstitium
19
spleen
18
CD4-positive, alpha-beta memory T cell
18
HFFc6
18
embryonic stem cell
18
glomerular endothelial cell
18
keratinocyte
18
left kidney
18
pancreatic beta cell
18
subcutaneous adipose tissue
18
tibial nerve
17
MCF-7
17
T-helper 1 cell
17
natural killer cell
17
pancreatic acinar cell
17
pancreatic alpha cell
16
endothelial cell of hepatic sinusoid
16
induced pluripotent stem cell
15
HepG2
15
T-helper 17 cell
15
astrocyte
15
caudate nucleus
15
coronary artery
15
mesenchymal stem cell
15
osteoblast
15
pancreatic delta cell
14
CD8-positive, alpha-beta memory T cell
14
GM12878
14
body of pancreas
13
excitatory neuron
13
fibroblast of cardiac tissue
13
pancreas
13
right atrium auricular region
12
lymphoblastoid cell line
12
mononuclear cell
12
neuroblastoma cell
12
retinal pigment epithelial cell
12
sigmoid colon
12
skeletal muscle myoblast
12
tibial artery
11
T-helper 2 cell
11
ascending aorta
11
endothelial cell of umbilical vein
11
erythroblast
11
foreskin fibroblast
11
foreskin keratinocyte
11
frontal cortex
11
mammary gland epithelial cell
11
neutrophil
11
ovary
11
psoas muscle
11
skeletal muscle satellite cell
11
substantia nigra
11
thyroid gland
10
Rhabdomyosarcoma
10
cardiac muscle cell
10
cerebellum
10
fibroblast of lung
10
gastric cancer cell
10
heart right ventricle
10
omental fat pad
10
pancreatic stellate cell
10
progenitor cell of endocrine pancreas
10
putamen
10
skeletal muscle tissue
10
testis
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
glomerular visceral epithelial cell
9
left cardiac atrium
9
liposarcoma
9
transverse colon
8
Ammon's horn
8
B-lymphoblastoid cell line
8
fibroblast cell line
8
fibroblast of dermis
8
gastrocnemius medialis
8
layer of hippocampus
8
lymphocyte
8
mammary epithelial cell
8
pituitary stalk
8
prostate gland
8
skeletal muscle fiber
8
skin fibroblast
8
temporal lobe
7
CD4-positive helper T cell
7
CD4-positive, alpha-beta T cell
7
aorta
7
bronchial epithelial cell
7
cardiomyocytes (cardiac muscle cell)
7
colon epithelial cell
7
endocrine pancreas
7
epithelial cell of prostate
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
hepatic stellate cell
7
mature neutrophil
7
memory B cell
mesendoderm
7
muscle of trunk
7
naive thymus-derived CD4-positive, alpha-beta T cell
7
neuronal stem cell
7
upper lobe of left lung
6
22Rv1
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
Caco-2 cell
6
Chondroid Chordoma
6
GM06990
6
GM12865
6
GM19238
6
GM19239
6
Jurkat
6
Peyer's patch
6
WERI-Rb-1
6
cardiac precursors (cardiac muscle cell)
6
chondrocyte
6
choroid plexus epithelial cell
6
hESC cell
6
iPSC derived cell line
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neuroblastoma cell line
6
plasma cell
6
smooth muscle cell of the coronary artery
6
thoracic aorta
6
type I muscle cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
CD1c-positive myeloid dendritic cell
5
CMK
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
Organ
1
brain
Date released
1
September, 2023
Software used
1
chicago
Lab
1
Struan F.A. Grant, CHOP
Project
1
AMP
RFA
1
AMP2
annotation_type!
candidate regulatory elements
biosample_term_name!
mesendoderm
month_released!
January, 2020
organ_slims!
embryo
Showing 1 of 1 results
table-tab-icon
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Download
FileSet
DSR843RXV
released
Annotation file set
: Target gene annotation of open chromatin regions from promoter capture c of ESC (1frag and 4 frag)
Lab:
Struan F.A. Grant, CHOP
Project:
AMP