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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
candidate regulatory elements
1
accessible chromatin
1
binding sites
chromatin state
histone modifications
Annotation Category
4
cis-regulatory elements
3
Target gene links
Annotation type Category
5
DNase-seq
4
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
7
bed bed3+
File set status
7
released
Genome assembly (visualization)
7
hg19
Organism
7
Homo sapiens
Biosample type
6
in vitro differentiated cells
1
stem cell
Biosample term
68
heart
66
stomach
63
kidney
61
HeLa-S3
52
brain
52
lung
51
H1-hESC
51
muscle of arm
48
adrenal gland
48
small intestine
45
monocyte
44
placenta
43
A549
43
muscle of leg
42
large intestine
41
common myeloid progenitor, CD34-positive
41
islet of Langerhans
41
muscle of back
39
left lung
38
liver
36
retina
36
thymus
34
B cell
34
right lung
33
K562
32
hematopoietic multipotent progenitor cell
32
right kidney
31
macrophage
31
neural progenitor cell
31
renal cortex interstitium
31
renal pelvis
30
fibroblast
28
spleen
27
CD14-positive monocyte
27
left kidney
27
spinal cord
25
adipose tissue
25
heart left ventricle
24
regulatory T cell
24
smooth muscle cell
23
CD4-positive, alpha-beta memory T cell
21
pericyte cell
21
tibial nerve
20
CD8-positive, alpha-beta T cell
20
body of pancreas
20
subcutaneous adipose tissue
19
HFFc6
19
MCF-7
19
T-helper 1 cell
19
adipocyte
18
T-helper 17 cell
18
natural killer cell
17
T cell
17
coronary artery
17
ovary
17
pancreas
17
right atrium auricular region
17
sigmoid colon
16
caudate nucleus
16
induced pluripotent stem cell
16
trophoblast cell
15
CD8-positive, alpha-beta memory T cell
15
H9
15
astrocyte
15
foreskin fibroblast
15
omental fat pad
15
psoas muscle
15
transverse colon
14
cardiac muscle cell
14
gastrocnemius medialis
14
mesenchymal stem cell
14
mononuclear cell
14
osteoblast
14
substantia nigra
14
thyroid gland
14
tibial artery
13
GM12878
13
T-helper 2 cell
13
excitatory neuron
13
frontal cortex
13
heart right ventricle
13
neutrophil
13
testis
12
CD4-positive, alpha-beta T cell
12
ascending aorta
12
muscle of trunk
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
putamen
12
skeletal muscle tissue
12
upper lobe of left lung
11
Ammon's horn
11
chorionic villus
11
fibroblast of cardiac tissue
11
fibroblast of lung
11
skeletal muscle myoblast
10
HepG2
10
Peyer's patch
10
cerebellum
10
embryonic stem cell
10
endocrine pancreas
10
layer of hippocampus
10
left renal cortex interstitium
10
pancreatic stellate cell
10
right renal pelvis
10
skeletal muscle satellite cell
9
cardiomyocytes
9
erythroblast
9
fibroblast of dermis
9
left renal pelvis
9
neurosphere
9
progenitor cell of endocrine pancreas
9
prostate gland
9
skin fibroblast
8
aorta
8
breast cancer cell
8
esophagus
8
lymphoblastoid cell line
8
pituitary stalk
8
skeletal muscle fiber
8
trophoblast
7
22Rv1
7
HEK293
7
IMR-90
7
cardiomyocytes (cardiac muscle cell)
7
esophagus muscularis mucosa
7
extended pluripotent stem (EPS) cells
7
fibroblast cell line
7
lower leg skin
7
lymphocyte
7
memory B cell
7
thoracic aorta
6
CD4-positive helper T cell
6
GM06990
6
GM12864
6
GM12865
6
GM19240
6
HAP-1
6
HL-60
6
HT-29
6
HUES8
6
MM.1S
6
NAMALWA cell
6
anterior cingulate cortex
6
cardiac precursors (cardiac muscle cell)
6
endometrium adenocarcinoma
6
eye
6
hepatic stellate cell
6
iPSC derived cell line
6
immortal human breast epithelial cell line cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neuronal stem cell
6
parathyroid adenoma
6
right renal cortex interstitium
6
temporal lobe
6
tongue
6
type I muscle cell
6
uterus
5
cardiac fibroblast
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
B Cell
5
BE(2)-C
5
BJ cell
5
C1 segment of cervical spinal cord
5
CD1c-positive myeloid dendritic cell
5
CMK
5
Caco-2 cell
5
Classical Dendritic Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Daoy
5
Degenerative Vascular Smooth Muscle Cell
5
Fibroblast
5
GM08714
5
GM10248
5
GM10266
5
GM12875
5
GM19238
5
GM19239
5
GM23248
5
HCT116
5
HUES6
5
Jurkat
5
KARPAS-422 cell
5
KBM-7
5
LHCN-M2
5
LNCAP
5
LNCaP clone FGC
5
LoVo cell
5
M2 Macrophage
5
MG63
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
Life stage
3
embryonic
Date released
2
February, 2021
2
September, 2022
1
June, 2020
1
March, 2020
1
May, 2021
Software used
2
macs
2
r
1
abc
1
encode-ccres
1
nospecificsoft_customcode
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
annotation_type!
chromatin state
histone modifications
month_released!
July, 2020
organ_slims!
epithelium
Showing 7 of 7 results
table-tab-icon
matrix-icon
Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP