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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
binding sites
chromatin state
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
4
ChIP-seq
3
DNase-seq
scRNA-seq
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
3
cell line
1
tissue
Biosample term
65
kidney
32
right kidney
31
renal cortex interstitium
31
renal pelvis
27
left kidney
21
epithelial cell of proximal tubule
19
glomerular endothelial cell
11
glomerular visceral epithelial cell
10
left renal cortex interstitium
10
left renal pelvis
10
right renal pelvis
9
right renal cortex interstitium
8
HEK293
8
kidney tubule cell
7
kidney glomerular epithelial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
renal cortical epithelial cell
6
kidney epithelial cell
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
Connecting Tubule Cell
5
Cortical Thick Ascending Limb Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Medullary Thick Ascending Limb Cell
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Renin-positive Juxtaglomerular Granular Cell
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
4
ACHN
4
Caki2
4
RCC 7860
4
cortex of kidney
4
kidney capillary endothelial cell
4
kidney distal convoluted tubule epithelial cell
4
kidney interstitial cell
4
renal cell carcinoma
3
G401
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney connecting tubule epithelial cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
2
HEK293T
2
kidney epithelium
2
kidney inner medulla collecting duct intercalated cell
2
metanephros
1
left kidney
1
RCC
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
S-shaped body
1
glomerular epithelium
1
kidney - cortex
1
kidney - medulla
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
nephron tubule
1
parietal epithelial cell
1
renal connecting tubule
1
renal cortex tubule
1
renal glomerulus
1
renal intercalated cell
1
renal principal cell
1
ureteric bud
Organ
4
kidney
1
epithelium
Life stage
2
child
1
young adult
Date released
2
February, 2021
2
September, 2022
Software used
2
r
1
encode-ccres
1
macs
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
annotation_type!
chromatin state
annotation_type_category!
scRNA-seq
Showing 4 of 4 results
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Download
FileSet
DSR225JEJ
released
Annotation file set
: Candidate regulatory elements for BSS00372 G401 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR131OKK
released
Annotation file set
: Target gene predictions for BSS00372 G401 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR093VBX
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE G401
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR436RUE
released
Annotation file set
: Binding sites annotation for Kidney Renal_tubular_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP