Clear Filters

Annotation type

2638pQTL
1709candidate regulatory elements
1357target gene predictions
976histone modifications
chromatin state
925accessible chromatin
817binding sites
684gene expression
484differential activity
178eQTL
141variant allelic effects
71Fine-mapped variants
25caQTL
7sQTL
5hQTL
4variant to gene
3meQTL
3other
1representative DNase hypersensitivity sites

Annotation Category

4428cis-regulatory elements
3073Genetic variant effects
1357Target gene links
1168Gene expression levels
2Others

Annotation type Category

4303ChIP-seq
3064DNase-seq
2638quantitative proteomics
540RNA-seq
515ATAC-seq
460snATAC-seq
305single cell RNA-seq
189HiC
147scRNA-seq
139H3K27ac ChIP-Seq
84snDropSeq
47pCHi-C
25snRNA-seq
17Expression arrays
5Capture-C
4RNA microarray
3DNA methylation profiling by array assay
1SNP-SELEX

Available data

6042bed bed3+
3546tsv
544bigWig
112txt
26csv
16bigBed narrowPeak
12bed bed3
12bed narrowPeak
3bam
3bed gappedPeak
3xls

File set status

10027released
1archived

Genome assembly (visualization)

6053hg19
1047GRCh38
4hg18

Organism

9980Homo sapiens

Biosample type

4769tissue
2667primary cell
2161cell line
426in vitro differentiated cells
3stem cell

Biosample term

2636whole blood
135monocyte
72endothelial cell
71heart
67stomach
65kidney
61HeLa-S3
55brain
55macrophage
52B cell
52H1-hESC
52lung
51muscle of arm
50CD8-positive, alpha-beta T cell
48adrenal gland
48small intestine
47neural progenitor cell
46placenta
46smooth muscle cell
45fibroblast
44A549
43large intestine
43muscle of leg
42islet of Langerhans
41T cell
41common myeloid progenitor, CD34-positive
41muscle of back
41natural killer cell
40hepatocyte
39adipocyte
39left lung
39liver
37retina
37thymus
34K562
34cardiac muscle cell
34right lung
33hematopoietic multipotent progenitor cell
32right kidney
31pancreatic ductal cell
31renal cortex interstitium
31renal pelvis
28spinal cord
28spleen
27CD14-positive monocyte
27left kidney
26heart left ventricle
25adipose tissue
25regulatory T cell
24epithelial cell of proximal tubule
23CD4-positive, alpha-beta memory T cell
23EndoC_BH1
23pericyte cell
22dendritic cell
22neuron
21MCF-7
21tibial nerve
20body of pancreas
20breast cancer cell
20glomerular endothelial cell
20pigmented layer of retina
19T-helper 1 cell
19endothelial cell of lymphatic vessel
19subcutaneous adipose tissue
18HFFc6
18T-helper 17 cell
18astrocyte
18foreskin keratinocyte
18mast cell
18pancreas
18pancreatic beta cell
18pericyte
17caudate nucleus
17coronary artery
17foreskin fibroblast
17keratinocyte
17ovary
17pancreatic acinar cell
17pancreatic alpha cell
17right atrium auricular region
17sigmoid colon
17trophoblast cell
16endothelial cell of hepatic sinusoid
16induced pluripotent stem cell
16osteoblast
15CD8-positive, alpha-beta memory T cell
15HepG2
15endocardial cell
15hepatic stellate cell
15mesenchymal stem cell
15omental fat pad
15pancreatic delta cell
15psoas muscle
15retinal pigment epithelial cell
15substantia nigra
15transverse colon
14GM12878
14gastrocnemius medialis
14mononuclear cell
14testis
14thyroid gland
14tibial artery
13H9
13T-helper 2 cell
13endothelial cell of umbilical vein
13excitatory neuron
13fibroblast of cardiac tissue
13frontal cortex
13heart right ventricle
13neutrophil
13putamen
13skeletal muscle satellite cell
13skeletal muscle tissue
13upper lobe of left lung
12CD4-positive, alpha-beta T cell
12ascending aorta
12cerebellum
12embryonic stem cell
12layer of hippocampus
12lymphoblastoid cell line
12muscle of trunk
12naive thymus-derived CD4-positive, alpha-beta T cell
12neuroblastoma cell
12neuronal stem cell
12prostate gland
12skeletal muscle myoblast
11Ammon's horn
11chorionic villus
11fibroblast of lung
11mammary epithelial cell
11mammary gland epithelial cell
10Peyer's patch
10Rhabdomyosarcoma
10bronchial epithelial cell
10endocrine pancreas
10gastric cancer cell
10glomerular visceral epithelial cell
10left renal cortex interstitium
10pancreatic stellate cell
10progenitor cell of endocrine pancreas
10right renal pelvis
10type B pancreatic cell
9cardiomyocytes
9diffuse intrinsic pontine glioma
9epithelial cell of prostate
9erythroblast
9fibroblast of dermis
9left renal pelvis
9liposarcoma
9lymphocyte
9neurosphere
9pancreatic A cell
9skin fibroblast
822Rv1
8B-lymphoblastoid cell line
8aorta
8breast epithelium
8choroid plexus epithelial cell
8esophagus
8fibroblast cell line
8pituitary stalk
8skeletal muscle fiber
8trophoblast
7GM12865
7HEK293
7amygdala
7cardiomyocytes (cardiac muscle cell)
7esophageal adenocarcinoma
7esophagus muscularis mucosa
7esophagus squamous epithelium
7extended pluripotent stem (EPS) cells
7kidney tubule cell
7leukocyte
7lower leg skin
7memory B cell
7mesendoderm
7neural cell
7temporal lobe
7thoracic aorta
6AG04449 cell
6AG04450 cell
6AG09309 cell
6AG09319 cell
6BJ cell
6Chondroid Chordoma
6GM06990
6HAP-1
6HT-29
6HUES8
6IMR-90
6Jurkat
6LNCAP
6NAMALWA cell
6SK-N-MC
6anterior cingulate cortex
6cardiac precursors (cardiac muscle cell)
6chondrocyte
6colon epithelial cell
6endometrium adenocarcinoma
6eye

Organ

2872vasculature
2826bodily fluid
2820blood vessel
2817blood
2653vein
908epithelium
592kidney
473connective tissue
406brain
320heart
312musculature of body
284pancreas
240lung
230intestine
194limb
187embryo
170liver
169skin of body
138large intestine
128adipose tissue
113extraembryonic component
100eye
95stomach
79uterus
75artery
74bone element
72mammary gland
65prostate gland
64small intestine
60__MARKER__
59adrenal gland
57placenta
54lymph node
54penis
51ureter
42gonad
38esophagus
38thymus
35spinal cord
28spleen
22lymphatic vessel
22testis
21nerve
19lymphoid tissue
19ovary
19thyroid gland
15mouth
15skeleton
14bronchus
13pituitary gland
11bone marrow
11breast
8tongue
8urinary bladder
8vagina
5trachea
3nose
1pericardium

Life stage

4680adult
1048embryonic
363unknown
71child
62fetal
57newborn
32young adult
30postnatal

Date released

2636February, 2025
2589February, 2021
1678September, 2022
384May, 2021
368February, 2024
333November, 2021
320May, 2026
289June, 2020
286September, 2023
152May, 2020
128August, 2021
125March, 2020
105January, 2022
101October, 2022
82January, 2020
70March, 2023
63February, 2020
56January, 2021
44November, 2022
40May, 2024
33July, 2025
32February, 2023
30March, 2024
19April, 2020
15May, 2022
13November, 2019
9August, 2018
9October, 2019
4March, 2026
3November, 2020
3September, 2018
2January, 2018
2January, 2025
1August, 2020
1August, 2022
1July, 2020
1June, 2021

Software used

2557macs
2385r
838encode-ccres
250abc
138qTLtools
136deltasvm
117deseq2
91chromhmm
36cicero
27chicago
27nospecificsoft_customcode
25seurat
23gtex_eqtl:V8
23gtex_finemapping_eQTL:caveman
23gtex_finemapping_eQTL:caviar
23gtex_finemapping_eQTL:dapg
18samtools
15limix
14hiccups
14matrix-eQTL
12deeptools
12umitools
11rasqual
9salmon
8fastqtl
6eigenmt
5peer
5unknown
3mach2qtl
3minfi
3sqtlseeker
2combined S2G strategy
2emmax
2mpraflow
1altius-index
1bedops
1betacells_cytokines_t1d
1bimbam
1cisgenome
1e-range
1epacts
1fast-lmm
1haploview
1pepatac
1probabel
1snap
1spp

Encyclopedia version

1Adipocyte.narrowpeak.bed.gz Adipocyte.consensus_summit_features.bed.gz
1Endothelial.narrowpeak.bed.gz Endothelial.consensus_summit_features.bed.gz
1FAP.narrowpeak.bed.gz Mesenchymal_Stem_Cell.consensus_summit_features.bed.gz
1Macrophage.narrowpeak.bed.gz Macrophage.consensus_summit_features.bed.gz
1Neuromuscular_junction.narrowpeak.bed.gz Neuromuscular_junction.consensus_summit_features.bed.gz
1Neuronal.narrowpeak.bed.gz Neuronal.consensus_summit_features.bed.gz
1Satellite_Cell.narrowpeak.bed.gz Satellite_Cell.consensus_summit_features.bed.gz
1Smooth_Muscle.narrowpeak.bed.gz Smooth_Muscle.consensus_summit_features.bed.gz
1T_cell.narrowpeak.bed.gz T_cell.consensus_summit_features.bed.gz
1Type_1.narrowpeak.bed.gz Type_1.consensus_summit_features.bed.gz
1Type_2a.narrowpeak.bed.gz Type_2a.consensus_summit_features.bed.gz
1Type_2x.narrowpeak.bed.gz Type_2x.consensus_summit_features.bed.gz

Lab

8514AMP-T2D consortium
501Kyle Gaulton, UCSD
393Bing Ren, UCSD
281KPMP
139Jesse Engreitz, Stanford University
67Stephen Parker, UMich
53Katalin Susztak, Upenn
24Ines Cebola, Imperial College London
19Xin Sun, UCSD
9Anna Gloyn, Oxford
8Struan F.A. Grant, CHOP
5ITG
4Doug Phanstiel, UNC
4Joseph Wu, Stanford
4Karen Mohlke, UNC
3Stephen S. Rich Lab @UVA

Project

9313AMP
333ENCODE
281KPMP
60T1D
19LungMap
17community
5ITG

Collection Tags

2635UK_Biobank
1847ChIP-Atlas
1666EpiMap
966ENCODE
636DGA
533AMP
420T1D
404T2DKP
320pyxis
281KPMP
185BLUEPRINT
174 T2DKP
1744DN
146GTEx
110T2D
100CMDGA
100eQTLCatalogue
67HPAP