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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
accessible chromatin
chromatin state
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
4
DNase-seq
3
ChIP-seq
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
4
cell line
Biosample term
65
kidney
32
right kidney
31
renal cortex interstitium
31
renal pelvis
27
left kidney
10
left renal cortex interstitium
10
left renal pelvis
10
right renal pelvis
9
right renal cortex interstitium
8
HEK293
7
kidney interstitial cell
5
Renin-positive Juxtaglomerular Granular Cell
4
ACHN
4
Caki2
4
RCC 7860
4
cortex of kidney
4
renal cell carcinoma
3
G401
3
kidney cell
3
kidney resident macrophage
2
HEK293T
2
metanephros
1
left kidney
1
RCC
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
kidney - cortex
1
kidney - medulla
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial fibroblast
Disease term
2
clear cell renal carcinoma
Organ
8
kidney
4
blood vessel
epithelium
4
vasculature
Life stage
3
adult
Date released
2
September, 2022
1
February, 2021
1
June, 2020
Software used
2
r
1
encode-ccres
1
macs
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
annotation_type!
chromatin state
organ_slims!
epithelium
Showing 4 of 4 results
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Download
FileSet
DSR461KQV
released
Annotation file set
: Candidate regulatory elements for BSS00160 Caki2 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR797XHP
released
Annotation file set
: Target gene predictions for BSS00160 Caki2 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR162JPE
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE Caki2
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR035CQD
released
Annotation file set
: Accessible chromatin annotation for Kidney Caki-2 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP