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Schema
Citing CMDGA
Clear Filters
Annotation type
4
candidate regulatory elements
3
target gene predictions
chromatin state
1
binding sites
Annotation Category
5
cis-regulatory elements
3
Target gene links
Annotation type Category
7
ChIP-seq
7
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
8
bed bed3+
File set status
8
released
Genome assembly (visualization)
8
hg19
Organism
8
Homo sapiens
Biosample type
8
cell line
Biosample term
69
heart
67
stomach
65
kidney
61
HeLa-S3
55
brain
52
H1-hESC
52
lung
51
muscle of arm
48
adrenal gland
48
small intestine
46
neural progenitor cell
46
placenta
44
A549
43
muscle of leg
41
islet of Langerhans
41
muscle of back
40
liver
39
left lung
37
retina
37
thymus
34
K562
34
right lung
33
hematopoietic multipotent progenitor cell
32
right kidney
31
renal cortex interstitium
31
renal pelvis
28
spinal cord
28
spleen
27
left kidney
26
heart left ventricle
25
adipose tissue
23
EndoC_BH1
21
MCF-7
21
tibial nerve
20
body of pancreas
20
breast cancer cell
20
pigmented layer of retina
20
subcutaneous adipose tissue
19
HFFc6
18
pancreas
17
caudate nucleus
17
coronary artery
17
ovary
17
right atrium auricular region
16
induced pluripotent stem cell
15
H9
15
HepG2
15
adipocyte
15
omental fat pad
15
psoas muscle
15
substantia nigra
14
GM12878
14
gastrocnemius medialis
14
testis
14
thyroid gland
14
tibial artery
13
frontal cortex
13
heart right ventricle
13
putamen
13
skeletal muscle tissue
13
upper lobe of left lung
12
ascending aorta
12
cerebellum
12
layer of hippocampus
12
lymphoblastoid cell line
12
muscle of trunk
12
neuroblastoma cell
12
prostate gland
11
Ammon's horn
11
chorionic villus
11
embryonic stem cell
10
Peyer's patch
10
Rhabdomyosarcoma
10
cardiac muscle cell
10
endocrine pancreas
10
gastric cancer cell
10
left renal cortex interstitium
10
progenitor cell of endocrine pancreas
10
right renal pelvis
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
left renal pelvis
9
liposarcoma
9
lymphocyte
9
mesenchymal stem cell
8
22Rv1
8
B-lymphoblastoid cell line
8
HEK293
8
IMR-90
8
aorta
8
breast epithelium
8
esophagus
8
fibroblast cell line
8
pituitary stalk
8
trophoblast
7
GM06990
7
GM12864
7
GM12865
7
GM19240
7
HAP-1
7
HL-60
7
Jurkat
7
MM.1S
7
NAMALWA cell
7
OCI-LY7
7
PC-9
7
SK-N-MC
7
amygdala
7
cardiomyocytes (cardiac muscle cell)
7
esophageal adenocarcinoma
7
esophagus muscularis mucosa
7
esophagus squamous epithelium
7
extended pluripotent stem (EPS) cells
7
lower leg skin
7
mesendoderm
7
neuronal stem cell
7
temporal lobe
7
thoracic aorta
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
CMK
6
Caco-2 cell
6
Chondroid Chordoma
6
GM12875
6
GM19238
6
GM19239
6
GM23248
6
HUES8
6
KARPAS-422 cell
6
LHCN-M2
6
LNCAP
6
LoVo cell
6
MG63
6
NT2-D1 cell
6
PC-3
6
Rh-4 cell
6
SK-N-SH
6
anterior cingulate cortex
6
cardiac precursors (cardiac muscle cell)
6
chondrocyte
6
endometrium adenocarcinoma
6
eye
6
globus pallidus
6
hESC cell
6
hypothalamus
6
iPSC derived cell line
6
immortal human breast epithelial cell line cell
6
neuroblastoma cell line
6
nucleus accumbens
6
occipital lobe
6
pancreatic ductal cell
6
parathyroid adenoma
6
right renal cortex interstitium
6
tongue
6
uterus
5
C1 segment of cervical spinal cord
5
CyT49
5
Daoy
5
Ewing sarcoma
5
GM08714
5
GM10248
5
GM10266
5
GM12891
5
GM12892
5
GM18507
5
H7-hESC
5
HUES6
5
HuH-7
5
KBM-7
5
LNCaP clone FGC
5
OCI-LY1
5
RPMI8226
5
RWPE1
5
SGBS preadipocytes
5
SJSA1
5
SK-N-DZ
5
WERI-Rb-1
5
WI38
5
chorion membrane
5
cingulate gyrus
5
endodermal cell
5
limb
5
osteosarcoma
5
prostate cancer cell line
5
right lobe of liver
5
urinary bladder
5
vagina
4
A172
4
A673
4
ACHN
4
B cell
4
Brodmann (1909) area 46
4
COLO205
4
Caki2
4
GM04503
Disease term
4
neuroblastoma
Organ
8
brain
Life stage
4
child
2
young adult
Date released
4
September, 2022
2
February, 2021
1
May, 2021
1
October, 2022
Software used
4
r
2
encode-ccres
1
abc
1
chromhmm
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
annotation_type!
chromatin state
biosample_type!
primary cell
organ_slims!
large intestine
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR744HBG
released
Annotation file set
: Binding sites annotation for SK-N-SH (SK-N-SH) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR277GGH
released
Annotation file set
: Candidate regulatory elements for BSS01571 SK-N-SH from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR410LTV
released
Annotation file set
: Candidate regulatory elements for BSS01562 SK-N-SH from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR237PDC
released
Annotation file set
: Target gene predictions for BSS01571 SK-N-SH from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR022HYM
released
Annotation file set
: Target gene predictions for BSS01562 SK-N-SH from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR955YDG
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE SK-N-SH
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR096VBD
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE SK-N-SH
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR266GVV
released
Annotation file set
: enhancer-gene predicton of SK-N-SH-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP