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Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
2
candidate regulatory elements
1
gene expression
1
variant allelic effects
Annotation Category
4
cis-regulatory elements
1
Gene expression levels
1
Genetic variant effects
Annotation type Category
5
snATAC-seq
1
snRNA-seq
Available data
5
bed bed3+
1
bigWig
File set status
6
released
Genome assembly (visualization)
6
hg19
3
GRCh38
Organism
6
Homo sapiens
Biosample type
67
tissue
17
in vitro differentiated cells
6
primary cell
Biosample term
130
monocyte
49
CD8-positive, alpha-beta T cell
42
endothelial cell
41
common myeloid progenitor, CD34-positive
35
B cell
33
hepatocyte
32
fibroblast
31
macrophage
27
CD14-positive monocyte
25
regulatory T cell
23
CD4-positive, alpha-beta memory T cell
23
pericyte cell
22
epithelial cell of proximal tubule
22
smooth muscle cell
21
natural killer cell
20
T-helper 1 cell
20
glomerular endothelial cell
19
pancreatic ductal cell
18
T cell
18
T-helper 17 cell
18
pancreatic beta cell
17
pancreatic alpha cell
16
astrocyte
16
endothelial cell of hepatic sinusoid
16
osteoblast
16
pancreatic acinar cell
16
pancreatic delta cell
15
CD8-positive, alpha-beta memory T cell
15
endothelial cell of umbilical vein
15
foreskin fibroblast
15
foreskin keratinocyte
14
T-helper 2 cell
14
keratinocyte
14
mononuclear cell
14
naive thymus-derived CD4-positive, alpha-beta T cell
14
trophoblast cell
13
neutrophil
13
skeletal muscle myoblast
12
CD4-positive, alpha-beta T cell
12
excitatory neuron
12
fibroblast of lung
12
mammary epithelial cell
11
skeletal muscle satellite cell
10
bronchial epithelial cell
10
glomerular visceral epithelial cell
10
mammary gland epithelial cell
10
neurosphere
9
erythroblast
9
fibroblast of cardiac tissue
9
fibroblast of dermis
9
hepatic stellate cell
9
mast cell
9
memory B cell
9
naive thymus-derived CD8-positive, alpha-beta T cell
9
retinal pigment epithelial cell
9
skeletal muscle fiber
8
dermis blood vessel endothelial cell
8
glutamatergic neuron
8
kidney tubule cell
8
pancreatic stellate cell
7
cardiac muscle cell
7
endothelial cell of lymphatic vessel
7
epithelial cell of prostate
7
fibroblast of mammary gland
7
fibroblast of pulmonary artery
7
fibroblast of villous mesenchyme
7
kidney glomerular epithelial cell
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
mesangial cell
7
renal cortical epithelial cell
7
skin fibroblast
7
type I muscle cell
7
type II muscle cell
7
type II pneumocyte
6
CD1c-positive myeloid dendritic cell
6
T-cell
6
adipocyte
6
choroid plexus epithelial cell
6
colon epithelial cell
6
cortical cell of adrenal gland
6
enterocyte
6
fibroblast of breast
6
gamma-delta T cell
6
kidney epithelial cell
6
luminal epithelial cell of mammary gland
6
mesenchymal stem cell
6
myoepithelial cell of mammary gland
6
myofibroblast cell
6
naive B cell
6
naive T cell
6
olfactory receptor cell
6
pancreatic polypeptide-secreting cell
6
peripheral blood mononuclear cell
6
plasma cell
6
pulmonary artery endothelial cell
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD4-positive helper T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
T follicular helper cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
basal cell
5
central memory CD8-positive, alpha-beta T cell
5
effector memory CD8-positive, alpha-beta T cell
5
endocardial cell
5
epithelial cell of esophagus
5
foreskin melanocyte
5
gabaergic neuron
5
inhibitory neuron
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
pancreatic endothelial cell
5
skeletal muscle cell
5
smooth muscle cell of the brain vasculature
5
tracheal epithelial cell
4
activated CD4-positive, alpha-beta T cell
4
acute myeloid leukemia cell
4
adult endothelial progenitor cell
4
aortic adventitial fibroblast
4
aortic endothelial cell
4
blood vessel smooth muscle cell
4
brain microvascular endothelial cell
4
cardiac fibroblast
4
dermis lymphatic vessel endothelial cell
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
enteric smooth muscle cell
4
fibroblast of peridontal ligament
4
fibroblast of the aortic adventitia
4
iris pigment epithelial cell
4
kidney capillary endothelial cell
4
kidney connecting tubule epithelial cell
4
leukocyte
4
lung microvascular endothelial cell
4
mature natural killer cell
4
megakaryocyte
4
memory T cell
4
memory regulatory T cell
4
mesothelial cell
4
nephron progenitor
4
neuronal stem cell
4
non-pigmented ciliary epithelial cell
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
Disease term
2
heart failure
Organ
6
connective tissue
Life stage
2
adult
Date released
3
February, 2024
2
May, 2024
1
November, 2021
Software used
2
macs
1
deeptools
1
deltasvm
1
r
1
samtools
1
umitools
Lab
2
Bing Ren, UCSD
2
Kyle Gaulton, UCSD
2
Stephen Parker, UMich
Project
5
AMP
1
ENCODE
RFA
4
AMP2
1
AMP
1
ENCODE3
annotation_type!
chromatin state
biosample_term_name!
Afferent / Efferent Arteriole Endothelial Cell
Showing 6 of 6 results
table-tab-icon
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Download
FileSet
DSR095UPL
released
Annotation file set
: Candidate cis-Regulatory Elements (cCREs) of adipocyte derived from RV snATAC-seq
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR542XFW
released
Annotation file set
: Candidate cis-Regulatory Elements (cCREs) of adipocyte derived from LV snATAC-seq
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR987PCG
released
Annotation file set
: Accessible chromatin annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR083CQX
released
Annotation file set
: Cell type chromatin broad peaks and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR143RUO
released
Annotation file set
: Cell type gene expression mean TPM and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR476AJZ
released
Annotation file set
: Variant allelic effects annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP