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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
variant allelic effects
1
accessible chromatin
1
binding sites
1
target gene predictions
Annotation Category
4
cis-regulatory elements
2
Genetic variant effects
1
Target gene links
Annotation type Category
5
DNase-seq
3
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
snATAC-seq
Available data
7
bed bed3+
1
bigWig
File set status
7
released
Genome assembly (visualization)
7
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
7
primary cell
6
in vitro differentiated cells
4
cell line
Biosample term
130
monocyte
47
CD8-positive, alpha-beta T cell
41
common myeloid progenitor, CD34-positive
30
hepatocyte
29
B cell
27
CD14-positive monocyte
25
regulatory T cell
23
CD4-positive, alpha-beta memory T cell
23
endothelial cell
21
epithelial cell of proximal tubule
20
T-helper 1 cell
19
glomerular endothelial cell
18
T-helper 17 cell
18
macrophage
18
natural killer cell
16
osteoblast
16
pancreatic beta cell
16
pancreatic ductal cell
15
CD8-positive, alpha-beta memory T cell
15
endothelial cell of umbilical vein
15
foreskin fibroblast
15
foreskin keratinocyte
15
pancreatic alpha cell
14
T cell
14
T-helper 2 cell
14
endothelial cell of hepatic sinusoid
14
mononuclear cell
14
naive thymus-derived CD4-positive, alpha-beta T cell
14
pancreatic delta cell
14
trophoblast cell
13
neutrophil
12
fibroblast of lung
12
mammary epithelial cell
12
pancreatic acinar cell
12
skeletal muscle myoblast
11
fibroblast
10
CD4-positive, alpha-beta T cell
10
bronchial epithelial cell
10
keratinocyte
10
neurosphere
9
fibroblast of dermis
9
glomerular visceral epithelial cell
9
naive thymus-derived CD8-positive, alpha-beta T cell
8
dermis blood vessel endothelial cell
8
mammary gland epithelial cell
8
pancreatic stellate cell
8
retinal pigment epithelial cell
8
smooth muscle cell
7
astrocyte
7
cardiac muscle cell
7
epithelial cell of prostate
7
fibroblast of mammary gland
7
fibroblast of pulmonary artery
7
fibroblast of villous mesenchyme
7
hepatic stellate cell
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
kidney tubule cell
7
memory B cell
6
CD1c-positive myeloid dendritic cell
6
T-cell
6
choroid plexus epithelial cell
6
fibroblast of breast
6
fibroblast of cardiac tissue
6
gamma-delta T cell
6
kidney glomerular epithelial cell
6
mesenchymal stem cell
6
myoepithelial cell of mammary gland
6
naive B cell
6
naive T cell
6
olfactory receptor cell
6
pancreatic polypeptide-secreting cell
6
peripheral blood mononuclear cell
6
pulmonary artery endothelial cell
6
renal cortical epithelial cell
6
skeletal muscle fiber
6
skeletal muscle satellite cell
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD4-positive helper T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
T follicular helper cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
central memory CD8-positive, alpha-beta T cell
5
effector memory CD8-positive, alpha-beta T cell
5
epithelial cell of esophagus
5
foreskin melanocyte
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
myofibroblast cell
5
pancreatic endothelial cell
5
skeletal muscle cell
5
skin fibroblast
5
smooth muscle cell of the brain vasculature
5
tracheal epithelial cell
5
type I muscle cell
5
type II muscle cell
4
activated CD4-positive, alpha-beta T cell
4
acute myeloid leukemia cell
4
adult endothelial progenitor cell
4
aortic adventitial fibroblast
4
aortic endothelial cell
4
brain microvascular endothelial cell
4
cardiac fibroblast
4
dermis lymphatic vessel endothelial cell
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
erythroblast
4
fibroblast of peridontal ligament
4
fibroblast of the aortic adventitia
4
glutamatergic neuron
4
iris pigment epithelial cell
4
kidney capillary endothelial cell
4
kidney connecting tubule epithelial cell
4
leukocyte
4
lung microvascular endothelial cell
4
mast cell
4
mature natural killer cell
4
memory T cell
4
memory regulatory T cell
4
mesangial cell
4
nephron progenitor
4
non-pigmented ciliary epithelial cell
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
plasma cell
4
preadipocyte
4
renal epithelial cell
4
vascular associated smooth muscle cell
3
Cycling Mononuclear Phagocyte
3
Ishikawa
3
Mast Cell
3
S-shaped body
3
Schwann cell
3
Th1 cell
3
Th17 cell
3
activated CD8-positive, alpha-beta T cell
3
adipocyte
3
astrocyte of the spinal cord
3
basal cell
Life stage
2
unknown
Date released
2
February, 2021
1
February, 2024
1
January, 2020
1
May, 2020
1
May, 2021
1
October, 2022
Software used
2
deltasvm
2
encode-ccres
1
abc
1
chromhmm
1
macs
Lab
5
AMP-T2D consortium
1
Bing Ren, UCSD
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
annotation_type!
chromatin state
month_released!
February, 2020
November, 2021
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR073XYT
released
Annotation file set
: Binding sites annotation for cardiac muscle cell (HCM) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR732JRY
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE cardiac muscle cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR009TSB
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE cardiac muscle cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR130JFC
released
Annotation file set
: enhancer-gene predicton of cardiac_muscle_cell-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR731EZG
released
Annotation file set
: Variant allelic effects annotation of Cardiomyocytes from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR562MNO
released
Annotation file set
: Genetic variants with deltaSVM predictions in heart cardiac muscle cell DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR433FIX
released
Annotation file set
: Accessible chromatin annotation of heart cardiac muscle cell from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP