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Citing CMDGA
Clear Filters
Annotation type
chromatin state
4
gene expression
Annotation Category
4
Gene expression levels
Annotation type Category
3
single cell RNA-seq
1
snRNA-seq
Available data
bed bed3+
3
csv
3
tsv
1
bigWig
File set status
4
released
Genome assembly (visualization)
1
hg19
Organism
4
Homo sapiens
Biosample type
3
in vitro differentiated cells
1
primary cell
Biosample term
28
islet of Langerhans
21
monocyte
16
epithelial cell of proximal tubule
16
induced pluripotent stem cell
15
glomerular endothelial cell
14
subcutaneous adipose tissue
13
hepatocyte
11
EndoC_BH1
11
cardiomyocytes
10
endothelial cell
10
pancreatic ductal cell
9
extended pluripotent stem (EPS) cells
9
liver
9
macrophage
9
progenitor cell of endocrine pancreas
9
regulatory T cell
8
H1-hESC
8
T-helper 1 cell
8
T-helper 17 cell
8
neural progenitor cell
8
putamen
7
caudate nucleus
7
cerebellum
7
frontal cortex
7
kidney
7
kidney loop of Henle thin ascending limb epithelial cell
7
omental fat pad
7
pancreatic acinar cell
7
right atrium auricular region
7
substantia nigra
7
tibial nerve
6
adipose tissue
6
amygdala
6
anterior cingulate cortex
6
body of pancreas
6
coronary artery
6
hypothalamus
6
kidney interstitial cell
6
lymphoblastoid cell line
6
nucleus accumbens
6
pancreatic alpha cell
6
pancreatic beta cell
6
pancreatic delta cell
6
tibial artery
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
Ammon's horn
5
B Cell
5
C1 segment of cervical spinal cord
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
ascending aorta
5
cerebellum (Hemisphere)
5
gastrocnemius medialis(Muscle - Skeletal)
5
glomerular visceral epithelial cell
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
left ventricle myocardium
5
mesangial cell
5
naive thymus-derived CD4-positive, alpha-beta T cell
5
pancreatic stellate cell
5
right lobe of liver
4
T-helper 2 cell
4
bone tissue
4
cardiac precursors (cardiac muscle cell)
4
cardiomyocytes (cardiac muscle cell)
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
endothelial cell of hepatic sinusoid
4
gamma-delta T cell
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
naive thymus-derived CD8-positive, alpha-beta T cell
4
nephron progenitor
4
neutrophil
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic endothelial cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
visceral abdominal adipose tissue
3
CD8-positive, alpha-beta T cell
3
Cycling Mononuclear Phagocyte
3
Mast Cell
3
S-shaped body
3
T follicular helper cell
3
adult endothelial progenitor cell
3
blood cell
3
brain
3
cartilage tissue
3
central memory CD8-positive, alpha-beta T cell
3
effector memory CD8-positive, alpha-beta T cell
3
heart
3
hepatocyte(AFP)
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
memory B cell
3
naive B cel
3
natural killer cell
3
pancreatic quiescent stellate cell
3
skeletal muscle tissue
3
skin of body
2
B cell
2
Kupffer cell
2
T cell
2
adipocyte
2
adipose-derived stem cell
2
adrenal gland
2
articular chondrocyte
2
blood
2
differentiating adipose-derived stem cell
2
dorsolateral prefrontal cortex
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
embryonic stem cell
2
fibroblast
2
heart left ventricle
2
hepatic stellate cell
2
iPSC derived cell line
2
kidney glomerular epithelial cell
2
kidney inner medulla collecting duct intercalated cell
2
leukocyte
2
lung
2
mature natural killer cell
2
memory T cell
2
memory regulatory T cell
2
minor salivary gland
2
muscle
2
osteoblast
2
ovary
2
pancreatic polypeptide-secreting cell
2
renal vesicle
2
retina
2
skeletal muscle fiber
2
skeletal muscle myoblast
2
skeletal muscle satellite cell
2
smooth muscle cell
2
smooth muscle cell of the coronary artery
2
spleen
2
stomach
2
testis
2
uterus
2
vagina
2
vascular associated smooth muscle cell
1
B-1 B cell
Organ
3
epithelium
3
liver
1
connective tissue
Life stage
3
unknown
Date released
4
February, 2024
Software used
4
r
1
deeptools
1
samtools
1
umitools
Lab
3
AMP-T2D consortium
1
Stephen Parker, UMich
Project
4
AMP
RFA
3
AMP
1
AMP2
annotation_type!
chromatin state
files.file_type!
bed bed3+
Showing 4 of 4 results
table-tab-icon
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Download
FileSet
DSR129ATN
released
Annotation file set
: Gene expression annotaion of liver cell in phase S from single cell transcriptome profiling of hESC-derived pancreatic progenitors
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR572UJX
released
Annotation file set
: Gene expression annotaion of liver cell in phase G2M from single cell transcriptome profiling of hESC-derived pancreatic progenitors
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR437EKE
released
Annotation file set
: Gene expression annotaion of liver cell in phase G1 from single cell transcriptome profiling of hESC-derived pancreatic progenitors
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR543XVO
released
Annotation file set
: Cell type gene expression mean TPM and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP