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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
target gene predictions
1
accessible chromatin
1
binding sites
1
histone modifications
Annotation Category
3
cis-regulatory elements
2
Target gene links
Annotation type Category
2
ChIP-seq
2
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
4
in vitro differentiated cells
1
stem cell
Biosample term
131
monocyte
61
HeLa-S3
50
CD8-positive, alpha-beta T cell
50
H1-hESC
44
A549
44
endothelial cell
42
islet of Langerhans
41
common myeloid progenitor, CD34-positive
39
B cell
38
neural progenitor cell
35
fibroblast
35
macrophage
34
K562
34
liver
33
hematopoietic multipotent progenitor cell
33
hepatocyte
28
kidney
28
retina
27
CD14-positive monocyte
27
stomach
25
adipose tissue
25
pancreatic ductal cell
25
regulatory T cell
25
spleen
24
adrenal gland
23
CD4-positive, alpha-beta memory T cell
23
EndoC_BH1
23
adipocyte
23
natural killer cell
23
pericyte cell
23
smooth muscle cell
22
epithelial cell of proximal tubule
21
MCF-7
21
tibial nerve
20
body of pancreas
20
breast cancer cell
20
glomerular endothelial cell
20
heart left ventricle
20
pigmented layer of retina
20
subcutaneous adipose tissue
19
T-helper 1 cell
18
HFFc6
18
T cell
18
T-helper 17 cell
18
foreskin keratinocyte
18
pancreas
18
pancreatic beta cell
17
caudate nucleus
17
coronary artery
17
foreskin fibroblast
17
keratinocyte
17
pancreatic acinar cell
17
pancreatic alpha cell
17
right atrium auricular region
17
sigmoid colon
16
endothelial cell of hepatic sinusoid
16
heart
16
induced pluripotent stem cell
16
osteoblast
15
CD8-positive, alpha-beta memory T cell
15
HepG2
15
astrocyte
15
omental fat pad
15
pancreatic delta cell
15
psoas muscle
15
retinal pigment epithelial cell
15
substantia nigra
15
transverse colon
14
GM12878
14
gastrocnemius medialis
14
mononuclear cell
14
ovary
14
thyroid gland
14
tibial artery
T-helper 2 cell
13
endothelial cell of umbilical vein
13
excitatory neuron
13
frontal cortex
13
neutrophil
13
putamen
13
skeletal muscle tissue
13
upper lobe of left lung
12
CD4-positive, alpha-beta T cell
12
ascending aorta
12
cerebellum
12
embryonic stem cell
12
layer of hippocampus
12
lymphoblastoid cell line
12
mesenchymal stem cell
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
neuroblastoma cell
12
prostate gland
12
skeletal muscle myoblast
11
Ammon's horn
11
fibroblast of cardiac tissue
11
fibroblast of lung
11
mammary epithelial cell
11
mammary gland epithelial cell
11
small intestine
10
Peyer's patch
10
Rhabdomyosarcoma
10
bronchial epithelial cell
10
endocrine pancreas
10
gastric cancer cell
10
glomerular visceral epithelial cell
10
lung
10
pancreatic stellate cell
10
progenitor cell of endocrine pancreas
10
skeletal muscle satellite cell
10
testis
9
cardiac muscle cell
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
epithelial cell of prostate
9
erythroblast
9
fibroblast of dermis
9
heart right ventricle
9
hepatic stellate cell
9
liposarcoma
9
lymphocyte
9
neuronal stem cell
8
22Rv1
8
B-lymphoblastoid cell line
8
brain
8
breast epithelium
8
choroid plexus epithelial cell
8
esophagus
8
fibroblast cell line
8
mast cell
8
pituitary stalk
8
skeletal muscle fiber
7
CD4-positive helper T cell
7
GM12865
7
amygdala
7
aorta
7
cardiomyocytes (cardiac muscle cell)
7
esophageal adenocarcinoma
7
esophagus muscularis mucosa
7
esophagus squamous epithelium
7
extended pluripotent stem (EPS) cells
7
kidney tubule cell
7
lower leg skin
7
memory B cell
7
temporal lobe
7
thoracic aorta
7
thymus
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
CD1c-positive myeloid dendritic cell
6
CMK
6
Caco-2 cell
6
Chondroid Chordoma
6
GM06990
6
GM12864
6
H9
6
HAP-1
6
HT-29
6
HUES8
6
Jurkat
6
LNCAP
6
NAMALWA cell
6
SK-N-MC
6
anterior cingulate cortex
6
chondrocyte
6
colon epithelial cell
6
endometrium adenocarcinoma
6
fibroblast of pulmonary artery
6
globus pallidus
6
hESC cell
6
hypothalamus
6
iPSC derived cell line
6
immortal human breast epithelial cell line cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neuroblastoma cell line
6
nucleus accumbens
6
occipital lobe
6
parathyroid adenoma
6
plasma cell
6
renal cortical epithelial cell
6
smooth muscle cell of the coronary artery
6
type I muscle cell
6
uterus
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
CyT49
5
Cycling Endothelial Cell
Life stage
embryonic
Date released
2
February, 2021
1
June, 2020
1
March, 2020
1
May, 2021
Software used
3
macs
1
abc
1
nospecificsoft_customcode
Lab
4
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
5
AMP
RFA
5
AMP
annotation_type!
chromatin state
biosample_term_name!
T-helper 2 cell
organ_slims!
extraembryonic component
relevant_life_stage!
embryonic
Showing 5 of 5 results
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Download
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP