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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
eQTL
2
gene expression
differential activity
Annotation Category
2
Gene expression levels
2
Genetic variant effects
Annotation type Category
4
RNA-seq
Available data
2
tsv
File set status
4
released
Genome assembly (visualization)
hg19
7
GRCh38
1
hg18
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
19
monocyte
14
islet of Langerhans
10
hepatocyte
10
macrophage
9
extended pluripotent stem (EPS) cells
9
progenitor cell of endocrine pancreas
9
regulatory T cell
8
EndoC_BH1
8
H1-hESC
8
T-helper 1 cell
8
T-helper 17 cell
8
neural progenitor cell
6
endothelial cell
6
lymphoblastoid cell line
6
pancreatic ductal cell
4
T-helper 2 cell
4
endothelial cell of hepatic sinusoid
4
naive thymus-derived CD8-positive, alpha-beta T cell
4
putamen
4
subcutaneous adipose tissue
3
Adaptive / Maladaptive / Repairing Fibroblast
3
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
Afferent / Efferent Arteriole Endothelial Cell
3
B Cell
3
CD8-positive, alpha-beta T cell
3
Classical Dendritic Cell
3
Connecting Tubule Cell
3
Connecting Tubule Intercalated Cell Type A
3
Connecting Tubule Principal Cell
3
Cortical Thick Ascending Limb Cell
3
Cycling Endothelial Cell
3
Cycling Epithelial Cell
3
Cycling Mononuclear Phagocyte
3
Cycling T Cell
3
Cytotoxic T Cell
3
Degenerative Connecting Tubule Cell
3
Degenerative Connecting Tubule Cell / Principal Cell
3
Degenerative Cortical Thick Ascending Limb Cell
3
Degenerative Distal Convoluted Tubule Cell
3
Degenerative Intercalated Cell Type A
3
Degenerative Peritubular Capillary Endothelial Cell
3
Degenerative Principal Cell
3
Degenerative Proximal Tubule Epithelial Cell
3
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
Degenerative Vascular Smooth Muscle Cell
3
Descending Thin Limb Cell Type 1
3
Distal Convoluted Tubule Cell Type 1
3
Fibroblast
3
Glomerular Capillary Endothelial Cell
3
Intercalated Cell Type A
3
Intercalated Cell Type B
3
Lymphatic Endothelial Cell
3
M2 Macrophage
3
Mast Cell
3
Medullary Thick Ascending Limb Cell
3
Mesangial Cell
3
Monocyte
3
Monocyte-derived Cell
3
Myofibroblast
3
Natural Killer T Cell
3
Natural Killer T Cell Type 1
3
Natural Killer T Cell Type 2
3
Non-Classical Monocyte
3
Parietal Epithelial Cell
3
Peritubular Capillary Endothelial Cell
3
Plasma Cell
3
Plasmacytoid Dendritic Cell
3
Podocyte
3
Principal Cell
3
Proximal Tubule Epithelial Cell Segment 1 and 2
3
Proximal Tubule Epithelial Cell Segment 3
3
Regulatory T Cell
3
Renin-positive Juxtaglomerular Granular Cell
3
T Cell
3
T follicular helper cell
3
Transitional Principal-Intercalated Cell
3
Vascular Smooth Muscle Cell / Pericyte
3
blood cell
3
brain
3
caudate nucleus
3
central memory CD8-positive, alpha-beta T cell
3
cerebellum
3
coronary artery
3
effector memory CD8-positive, alpha-beta T cell
3
frontal cortex
3
glomerular endothelial cell
3
hepatocyte(AFP)
3
liver
3
memory B cell
3
naive B cel
3
omental fat pad
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic delta cell
3
right atrium auricular region
3
skin of body
3
substantia nigra
3
tibial nerve
2
B cell
2
CD4-positive helper T cell
2
T cell
2
adipose-derived stem cell
2
adrenal gland
2
amygdala
2
anterior cingulate cortex
2
articular chondrocyte
2
body of pancreas
2
cardiomyocytes (cardiac muscle cell)
2
differentiating adipose-derived stem cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
embryonic stem cell
2
epithelial cell of proximal tubule
2
fibroblast
2
gamma-delta T cell
2
heart
2
heart left ventricle
2
hypothalamus
2
iPSC derived cell line
2
kidney glomerular epithelial cell
2
lung
2
mature natural killer cell
2
memory T cell
2
memory regulatory T cell
2
minor salivary gland
2
muscle
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
natural killer cell
2
nucleus accumbens
2
ovary
2
pancreatic polypeptide-secreting cell
2
pancreatic stellate cell
2
retina
2
skeletal muscle myoblast
2
smooth muscle cell of the coronary artery
2
spleen
2
stomach
2
testis
2
tibial artery
2
uterus
2
vagina
1
Ammon's horn
1
B-1 B cell
1
B-1a B cell
1
B-2 B cell
1
C1 segment of cervical spinal cord
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
HepG2
1
Leydig cell
1
Pancreatic islets
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
Schwann cell
1
abdominal aorta artery
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
activated pancreatic stellate cell
1
adipose tissue
1
alternatively activated macrophage
1
aorta
1
aortic valve
1
astrocyte
1
breast
1
breast - mammary tissue
1
cardiac atrium fibroblast
1
cardiac fibroblast
1
cardiac muscle cell (pacemaker cell)
1
cardiac precursors (cardiac muscle cell)
1
cardiac ventricle fibroblast
1
cells - EBV-transformed lymphocytes
1
cells - cultured fibroblasts
1
central memory CD4-positive, alpha-beta T cell
1
cerebellar hemisphere
1
cerebellum (Hemisphere)
1
cervix - ectocervix
1
cervix - endocervix
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
cortex
1
cortex of kidney
1
cytotoxic T cell
1
dendritic cell
1
diencephalon
1
dorsolateral prefrontal cortex
1
effector CD8-positive, alpha-beta T cell
1
effector memory CD4-positive, alpha-beta T cell
1
endothelial cell of coronary artery
1
endothelial cell of umbilical vein
1
esophagus
1
esophagus - gastroesophageal junction
1
esophagus - mucosa
1
esophagus - muscularis
1
esophagus mucosa
1
esophagus muscularis mucosa
Organ
4
adipose tissue
4
connective tissue
Life stage
3
adult
Date released
February, 2021
1
August, 2021
1
February, 2020
1
January, 2018
1
January, 2022
Software used
2
r
1
mach2qtl
1
qTLtools
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
annotation_type!
differential activity
assembly!
hg19
month_released!
February, 2021
organ_slims!
urinary bladder
Showing 4 of 4 results
table-tab-icon
matrix-icon
Download
FileSet
DSR943WPJ
released
Annotation file set
: adipose subcutaneous eQTL of studay GTEx from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR397GGI
released
Annotation file set
: eQTLS in different tissues: subcutaneous fat (609 samples)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR818ESF
released
Annotation file set
: Gene expression levels of adipose subcutaneous from RNA-seq (ENCODE)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR545375
released
Annotation file set
: GTEx Analysis V8 (dbGaP Accession phs000424.v8.p2) and GTEx Analysis V7 (dbGaP Accession phs000424.v7.p2) TPM gene expression values from GTEx for key tissues - adipose subcutaneous
Lab:
AMP-T2D consortium
Project:
AMP