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Schema
Citing CMDGA
Clear Filters
Annotation type
2
target gene predictions
1
accessible chromatin
1
candidate regulatory elements
1
chromatin state
Annotation Category
3
cis-regulatory elements
2
Target gene links
Annotation type Category
4
DNase-seq
3
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
4
bed bed3+
1
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
cell line
Biosample term
49
small intestine
41
large intestine
18
sigmoid colon
15
transverse colon
10
Peyer's patch
9
colon epithelial cell
7
colonic mucosa
7
duodenal mucosa
7
mucosa of rectum
6
enterocyte
6
muscle layer of colon
6
muscle layer of duodenum
5
HCT116
5
HT-29
4
SW480
4
enteric smooth muscle cell
4
rectum smooth muscle tissue
3
HCT-116 cell
2
enterocyte of epithelium of small intestine
2
paneth cell
2
small intestine goblet cell
1
RKO
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
crypt of Lieberkuhn
1
small intestine - terminal Ileum
Disease term
3
colorectal adenocarcinoma
Organ
5
intestine
5
large intestine
Life stage
3
adult
Date released
February, 2021
3
September, 2022
1
June, 2020
1
May, 2021
Software used
2
r
1
abc
1
chromhmm
1
macs
Lab
4
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
5
AMP
RFA
5
AMP
annotation_type!
differential activity
month_released!
February, 2021
organ_slims!
nose
Showing 5 of 5 results
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Download
FileSet
DSR691VDL
released
Annotation file set
: Candidate regulatory elements for BSS00708 HT-29 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR883VDG
released
Annotation file set
: Target gene predictions for BSS00708 HT-29 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR895ABN
released
Annotation file set
: Chromatin states for BSS00708 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR797VJC
released
Annotation file set
: enhancer-gene predicton of HT29 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR208YEV
released
Annotation file set
: Accessible chromatin annotation for Digestive tract HT-29 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP