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Citing CMDGA
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Annotation type
1
target gene predictions
Annotation Category
1
Target gene links
Annotation type Category
ChIP-seq
1
ATAC-seq
1
DNase-seq
1
H3K27ac ChIP-Seq
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
primary cell
1
cell line
Biosample term
52
HeLa-S3
47
H1-hESC
25
islet of Langerhans
25
retina
21
EndoC_BH1
20
pigmented layer of retina
19
HFFc6
18
K562
18
kidney
18
neural progenitor cell
17
induced pluripotent stem cell
12
subcutaneous adipose tissue
11
cardiomyocytes
11
coronary artery
11
heart
10
liver
10
pituitary stalk
10
right atrium auricular region
10
tibial nerve
9
adipocyte
9
extended pluripotent stem (EPS) cells
9
pancreas
9
progenitor cell of endocrine pancreas
9
tibial artery
8
GM12878
8
adipose tissue
8
cardiomyocytes (cardiac muscle cell)
8
frontal cortex
8
heart left ventricle
7
Ammon's horn
7
H9
7
body of pancreas
7
caudate nucleus
7
embryonic stem cell
7
omental fat pad
7
putamen
6
SGBS preadipocytes
6
ascending aorta
6
cardiac precursors (cardiac muscle cell)
6
cerebellum
6
dendritic cell
6
lymphocyte
6
retinal pigment epithelial cell
6
stomach
5
HUES8
5
adrenal gland
5
cerebellum (Hemisphere)
5
chondrocyte
5
heart right ventricle
5
pancreatic ductal cell
5
psoas muscle
5
spleen
4
C1 segment of cervical spinal cord
4
CyT49
4
HepG2
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
amygdala
4
anterior cingulate cortex
4
bone tissue
4
brain
4
gastrocnemius medialis(Muscle - Skeletal)
4
hypothalamus
4
iPSC derived cell line
4
left ventricle myocardium
4
nucleus accumbens
4
occipital lobe
4
ovary
4
right lobe of liver
4
substantia nigra
4
thymus
3
Jurkat
3
U937
3
aorta
3
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
3
globus pallidus
3
hepatocyte(AFP)
3
left cardiac atrium
3
medulla oblongata
3
mesenchymal stem cell
3
mesendoderm
3
midbrain
3
muscle of leg
3
pons
3
renal pelvis
3
sigmoid colon
3
small intestine
3
spinal cord
3
superior temporal gyrus
3
uterus
3
visceral abdominal adipose tissue
2
hindlimb muscle
2
muscle of leg
2
A549
2
B cell
2
BJAB cell
2
GM18507
2
GM19240
2
H7-hESC
2
HAP-1
2
HCT-116 cell
2
HCT116
2
HT-29
2
IMR-90
2
KARPAS-422 cell
2
LNCAP
2
LoVo cell
2
MCF 10A cell
2
MCF-7
2
MDA-MB-231 cell
2
MIN6
2
MM.1S
2
NCCIT cell
2
OCI-LY7
2
PC-9
2
Rh-4 cell
2
THP-1
2
adipose-derived stem cell
2
bipolar neuron
2
breast epithelium
2
cartilage tissue
2
differentiating adipose-derived stem cell
2
dorsolateral prefrontal cortex
2
endothelial cell
2
excitatory neuron
2
fibroblast cell line
2
fibroblast of cardiac tissue
2
gastrocnemius medialis
2
glomerular visceral epithelial cell
2
hematopoietic multipotent progenitor cell
2
hippocampal neuron
2
large intestine
2
left renal cortex interstitium
2
left renal pelvis
2
lower motor neuron
2
lung
2
lymphocyte of B lineage (iPSC)
2
macrophage
2
middle frontal gyrus
2
muscle of arm
2
neuronal stem cell
2
pancreatic stellate cell
2
placenta
2
renal cortex interstitium
2
right cardiac atrium
2
right kidney
2
right renal cortex interstitium
2
right renal pelvis
2
smooth muscle cell of the coronary artery
2
testis
2
thoracic aorta
2
thyroid gland
2
tissue
2
transverse colon
2
trophoblast
1
left kidney
1
omental fat pad
1
786-O cell
1
A-673 cell
1
A172
1
A673
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
Adipose SGBS cell line (adipocyte)
1
B-lymphoblastoid cell line
1
BE(2)-C
1
BJ cell
1
CD4-positive helper T cell
1
CD8-positive, alpha-beta T cell
1
CMK
1
COLO-829 cell
1
COLO205
1
Caco-2 cell
1
Caki2
1
D341 Med cell
1
DG-75 cell
1
Daoy
1
ECC-1
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
G-401 cell
1
GM03348
1
GM04503
1
GM04504
1
GM06990
1
GM10248
1
GM10266
1
GM12864
1
GM12865
1
GM13976
1
GM13977
1
GM18486
1
GM18505
1
GM18508
1
GM18516
1
GM18522
Date released
1
May, 2021
Software used
1
abc
Lab
1
Jesse Engreitz, Stanford University
Project
1
AMP
RFA
1
AMP
annotation_type!
eQTL
annotation_type_category!
ChIP-seq
biosample_type!
primary cell
Showing 1 of 1 results
table-tab-icon
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Download
FileSet
DSR303OXY
released
Annotation file set
: enhancer-gene predicton of THP-1_monocyte-VanBortle2017 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP