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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
chromatin state
2
binding sites
1
histone modifications
Annotation Category
6
cis-regulatory elements
Annotation type Category
37
HiC
11
ChIP-seq
DNase-seq
9
RNA-seq
3
snDropSeq
2
ATAC-seq
1
H3K27ac ChIP-Seq
1
scRNA-seq
Available data
4
bed bed3+
2
bed bed9
File set status
6
released
Genome assembly (visualization)
6
hg19
2
GRCh38
Organism
6
Homo sapiens
Biosample type
4
cell line
1
primary cell
1
stem cell
Biosample term
89
monocyte
31
CD8-positive, alpha-beta T cell
24
neural progenitor cell
23
heart
22
brain
21
A549
20
breast cancer cell
20
stomach
19
kidney
17
placenta
16
lung
15
muscle of arm
15
muscle of leg
15
small intestine
14
adrenal gland
13
common myeloid progenitor, CD34-positive
13
large intestine
13
left lung
13
muscle of back
12
hematopoietic multipotent progenitor cell
12
neuroblastoma cell
11
gastric cancer cell
11
liver
11
thymus
10
B cell
10
HepG2
10
K562
10
MCF-7
10
diffuse intrinsic pontine glioma
10
keratinocyte
10
right lung
9
CD4-positive, alpha-beta memory T cell
9
Rhabdomyosarcoma
9
embryonic stem cell
9
heart left ventricle
9
liposarcoma
9
spinal cord
8
T-cell acute lymphoblastic leukemia
8
adipocyte
8
esophageal adenocarcinoma
8
renal pelvis
8
right kidney
7
B-lymphoblastoid cell line
7
CD8-positive, alpha-beta memory T cell
7
adipose tissue
7
fibroblast cell line
7
foreskin fibroblast
7
hESC cell
7
left kidney
7
mature neutrophil
6
Chondroid Chordoma
6
acute myeloid leukemia
6
bronchial epithelial cell
6
cardiac muscle cell
6
endothelial cell of hepatic sinusoid
6
endothelial cell of umbilical vein
6
fibroblast of cardiac tissue
6
hepatocyte
6
left cardiac atrium
6
mammary epithelial cell
6
neuroblastoma cell line
6
renal cortex interstitium
6
spleen
5
CD14-positive, CD16-negative classical monocyte
5
Ewing sarcoma
5
GM12878
5
H1-hESC
5
T cell
5
caudate nucleus
5
esophageal squamous cell carcinoma
5
fibroblast of lung
5
foreskin keratinocyte
5
glioblastoma multiforme cancer stem cell
5
mammary gland epithelial cell
5
osteosarcoma
5
prostate cancer cell line
5
prostate gland
5
temporal lobe
4
22Rv1
4
AG04449 cell
4
AG04450 cell
4
AG09309 cell
4
AG09319 cell
4
AG10803 cell
4
BE(2)-C
4
BJ cell
4
CD14-positive monocyte
4
Caco-2 cell
4
GM06990
4
GM12864
4
GM12865
4
GM12875
4
GM12891
4
GM12892
4
GM19238
4
GM19239
4
GM19240
4
HEK293
4
HL-60
4
HS-SY-2 cell
4
HeLa-S3
4
IMR-90
4
Jurkat
4
KARPAS-422 cell
4
Mantle cell lymphoma
4
NAMALWA cell
4
NT2-D1 cell
4
RS4-11 cell
4
Rh-4 cell
4
SK-N-MC
4
Th1 cell
4
Tumor-derived cell line
4
WERI-Rb-1
4
alternatively activated macrophage
4
angular gyrus
4
aorta
4
body of pancreas
4
chorionic villus
4
choroid plexus epithelial cell
4
colon adenocarcinoma
4
colonic mucosa
4
dermal fibroblast
4
dermis lymphatic vessel endothelial cell
4
diffuse large B-cell lymphoma
4
endodermal cell
4
epithelial cell of prostate
4
erythroblast
4
erythroid progenitor cell
4
fibroblast
4
fibroblast of dermis
4
fibroblast of mammary gland
4
fibroblast of pulmonary artery
4
fibroblast of villous mesenchyme
4
gastrocnemius medialis
4
glioblastoma cell
4
glioma cell
4
immortal neural cell line cell
4
islet of Langerhans
4
layer of hippocampus
4
mononuclear cell
4
natural killer cell
4
neuronal stem cell
4
osteoblast
4
retina
4
skeletal muscle myoblast
4
squamous cell lung carcinoma
4
synovial sarcoma cell
4
tracheal epithelial cell
4
triple-negative breast cancer
4
upper lobe of left lung
3
B-lymphocyte
3
CD1c-positive myeloid dendritic cell
3
CD4-positive, alpha-beta T cell
3
CMK
3
COLO-320 cell
3
COLO205
3
DND-41 cell
3
GM08714
3
GM10847
3
GM12872
3
GM12873
3
GM18505
3
GM18526
3
GM18951
3
GM19099
3
GM19193
3
GM23248
3
HAC cell
3
HAP-1
3
HBMEC cell
3
HCT-116 cell
3
HEK293-T-REx cell
3
HK-2 cell
3
HT-29
3
HuH-7
3
LHCN-M2
3
LoVo cell
3
MG63
3
MM.1S
3
NHEK
3
Normal Human Astrocytes
3
OCI-LY1
3
OCI-LY7
3
PANC-1 cell
3
PC-3
3
PC-9
3
Peyer's patch
3
RPMI8226
3
RWPE1
3
Raji cell
3
SAEC
3
SH-SY5Y cell
3
SK-N-DZ
3
SK-N-SH
3
SK-N-SH_RA
3
SW480
3
T-47D cell
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
Organ
5
embryo
1
epithelium
1
kidney
Life stage
2
embryonic
1
child
Date released
2
February, 2021
2
September, 2022
1
August, 2017
1
October, 2022
Software used
4
chromhmm
2
macs
Lab
5
AMP-T2D consortium
1
Stephen Parker, UMich
Project
6
AMP
RFA
6
AMP
annotation_type!
eQTL
annotation_type_category!
DNase-seq
Showing 6 of 6 results
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Download
FileSet
DSR876GWY
released
Annotation file set
: Binding sites annotation for H1-hESC (H1-hESC) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR002BRL
released
Annotation file set
: Chromatin states for BSS00478 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR420PUK
released
Annotation file set
: Chromatin states for BSS00389 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR416QNM
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR188ZAX
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR642714
released
Annotation file set
: ChromHMM 13-state model for H1
Lab:
Stephen Parker, UMich
Project:
AMP