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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
candidate regulatory elements
1
accessible chromatin
1
binding sites
1
histone modifications
Annotation Category
5
cis-regulatory elements
3
Target gene links
Annotation type Category
5
ChIP-seq
5
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
8
bed bed3+
File set status
8
released
Genome assembly (visualization)
9
hg19
GRCh38
Organism
8
Homo sapiens
Biosample type
7
in vitro differentiated cells
1
stem cell
Biosample term
66
heart
66
stomach
55
kidney
52
brain
51
lung
50
muscle of arm
47
adrenal gland
47
small intestine
45
placenta
44
A549
42
muscle of leg
41
muscle of back
39
left lung
37
thymus
35
retina
34
right lung
33
hematopoietic multipotent progenitor cell
33
liver
31
right kidney
30
renal cortex interstitium
30
renal pelvis
27
islet of Langerhans
27
left kidney
27
spinal cord
25
spleen
23
neural progenitor cell
22
EndoC_BH1
21
MCF-7
21
adipose tissue
21
heart left ventricle
20
breast cancer cell
20
pigmented layer of retina
19
K562
19
adipocyte
17
embryonic stem cell
16
H1-hESC
16
induced pluripotent stem cell
16
ovary
15
body of pancreas
15
psoas muscle
14
gastrocnemius medialis
14
pancreas
14
tibial nerve
13
heart right ventricle
13
testis
13
thyroid gland
13
upper lobe of left lung
12
layer of hippocampus
12
muscle of trunk
12
neuroblastoma cell
11
HepG2
11
Peyer's patch
11
caudate nucleus
11
chorionic villus
11
skeletal muscle tissue
10
HeLa-S3
10
Rhabdomyosarcoma
10
endocrine pancreas
10
gastric cancer cell
10
progenitor cell of endocrine pancreas
10
prostate gland
9
GM12878
9
H9
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
liposarcoma
9
mesenchymal stem cell
8
22Rv1
8
B-lymphoblastoid cell line
8
HEK293
8
IMR-90
8
SK-N-SH
8
aorta
8
breast epithelium
8
cardiac muscle cell
8
coronary artery
8
fibroblast cell line
8
left renal cortex interstitium
8
omental fat pad
8
pituitary stalk
8
right atrium auricular region
8
right renal pelvis
8
subcutaneous adipose tissue
8
temporal lobe
8
trophoblast
7
GM06990
7
GM12864
7
GM12865
7
HAP-1
7
HL-60
7
Jurkat
7
KARPAS-422 cell
7
MM.1S
7
NAMALWA cell
7
OCI-LY7
7
PC-9
7
SK-N-DZ
7
SK-N-MC
7
cardiomyocytes (cardiac muscle cell)
7
esophageal adenocarcinoma
7
esophagus muscularis mucosa
7
esophagus squamous epithelium
7
extended pluripotent stem (EPS) cells
7
left renal pelvis
7
lower leg skin
7
mesendoderm
7
neuronal stem cell
7
substantia nigra
7
tibial artery
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
Ammon's horn
6
BE(2)-C
6
BJ cell
6
CMK
6
Caco-2 cell
6
Chondroid Chordoma
6
GM12875
6
GM19240
6
GM23248
6
LHCN-M2
6
LNCAP
6
LoVo cell
6
MG63
6
NT2-D1 cell
6
PC-3
6
RWPE1
6
Rh-4 cell
6
SGBS preadipocytes
6
WERI-Rb-1
6
cardiac precursors (cardiac muscle cell)
6
cerebellum
6
chondrocyte
6
cingulate gyrus
6
endometrium adenocarcinoma
6
esophagus
6
eye
6
hESC cell
6
immortal human breast epithelial cell line cell
6
neuroblastoma cell line
6
occipital lobe
6
parathyroid adenoma
6
right renal cortex interstitium
6
thoracic aorta
6
tongue
5
Daoy
5
Ewing sarcoma
5
GM08714
5
GM10248
5
GM10266
5
GM12891
5
GM12892
5
GM19238
5
GM19239
5
H7-hESC
5
HUES6
5
HuH-7
5
KBM-7
5
LNCaP clone FGC
5
OCI-LY1
5
RPMI8226
5
SJSA1
5
T-cell acute lymphoblastic leukemia
5
WI38
5
ascending aorta
5
chorion membrane
5
endodermal cell
5
frontal cortex
5
limb
5
lymphoblastoid cell line
5
osteosarcoma
5
prostate cancer cell line
5
putamen
5
urinary bladder
4
A172
4
A673
4
ACHN
4
B cell
4
Brodmann (1909) area 46
4
COLO205
4
Caki2
4
GM04503
4
GM04504
4
GM12873
4
GM18507
4
H4
4
HAC cell
4
HBMEC cell
4
HK-2 cell
4
HS-SY-2 cell
4
HUES64
4
L1-S8
4
M059J
4
MDA-MB-231 cell
4
Mantle cell lymphoma
4
NB4
4
NCCIT cell
Life stage
3
embryonic
Date released
3
February, 2021
2
September, 2022
1
June, 2020
1
March, 2020
1
May, 2021
Software used
3
macs
2
r
1
abc
1
encode-ccres
1
nospecificsoft_customcode
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
annotation_type!
eQTL
assembly!
GRCh38
biosample_type!
primary cell
organ_slims!
large intestine
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP