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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
chromatin state
1
accessible chromatin
Annotation Category
5
cis-regulatory elements
Annotation type Category
3
snATAC-seq
2
ChIP-seq
Available data
3
bed bed3+
2
bed bed9
1
bigWig
File set status
5
released
Genome assembly (visualization)
28
hg19
5
GRCh38
Organism
5
Homo sapiens
Biosample type
3
primary cell
2
in vitro differentiated cells
Biosample term
97
monocyte
54
HeLa-S3
38
H1-hESC
27
neural progenitor cell
25
kidney
24
heart
23
fibroblast
22
K562
22
endothelial cell
21
pericyte cell
19
HFFc6
19
brain
19
hepatocyte
19
stomach
18
A549
17
muscle of arm
16
endothelial cell of hepatic sinusoid
16
lung
16
muscle of leg
16
smooth muscle cell
15
macrophage
15
small intestine
14
B cell
14
adrenal gland
14
placenta
13
common myeloid progenitor, CD34-positive
13
excitatory neuron
13
large intestine
13
left lung
13
muscle of back
11
astrocyte
11
heart left ventricle
11
right kidney
11
right lung
11
thymus
10
coronary artery
10
hematopoietic multipotent progenitor cell
10
renal cortex interstitium
10
renal pelvis
9
CD4-positive, alpha-beta memory T cell
9
T cell
9
left kidney
9
liver
9
tibial nerve
8
tibial artery
7
CD8-positive, alpha-beta memory T cell
7
GM12878
7
H9
7
ascending aorta
7
body of pancreas
7
caudate nucleus
7
colon epithelial cell
7
left cardiac atrium
7
lymphocyte
7
omental fat pad
7
right atrium auricular region
7
spinal cord
7
spleen
6
HepG2
6
adipose tissue
6
cerebellum
6
endothelial cell of lymphatic vessel
6
fibroblast of cardiac tissue
6
frontal cortex
6
heart right ventricle
6
keratinocyte
6
mononuclear cell
6
natural killer cell
6
olfactory receptor cell
6
pancreatic acinar cell
6
pancreatic ductal cell
6
skeletal muscle satellite cell
5
Ammon's horn
5
MCF-7
5
adipocyte
5
cortical cell of adrenal gland
5
endocardial cell
5
endothelial cell of umbilical vein
5
erythroblast
5
inhibitory neuron
5
islet of Langerhans
5
luminal epithelial cell of mammary gland
5
mammary gland epithelial cell
5
mast cell
5
pancreas
5
putamen
5
sigmoid colon
5
subcutaneous adipose tissue
5
substantia nigra
5
trophoblast cell
5
type II pneumocyte
4
CD14-positive monocyte
4
CyT49
4
HUES8
4
angular gyrus
4
aorta
4
blood vessel smooth muscle cell
4
chorionic villus
4
endocrine pancreas
4
enteric smooth muscle cell
4
foreskin keratinocyte
4
gabaergic neuron
4
gastrocnemius medialis
4
glutamatergic neuron
4
hepatic stellate cell
4
iPSC derived cell line
4
muscle of trunk
4
osteoblast
4
ovary
4
pancreatic beta cell
4
psoas muscle
4
retina
4
right lobe of liver
4
skin fibroblast
4
smooth muscle cell of the esophagus
4
temporal lobe
4
thoracic aorta
4
thyroid gland
4
transverse colon
3
cardiac fibroblast
3
C1 segment of cervical spinal cord
3
CD4-positive helper T cell
3
HCT116
3
Peyer's patch
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
amygdala
3
anterior cingulate cortex
3
cardiac muscle cell
3
cerebellum (Hemisphere)
3
chorion membrane
3
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
3
endometrium adenocarcinoma
3
enteric neuron
3
enterocyte
3
fibroblast of dermis
3
fibroblast of lung
3
gastrocnemius medialis(Muscle - Skeletal)
3
hypothalamus
3
immortal human breast epithelial cell line cell
3
kidney tubule cell
3
layer of hippocampus
3
left renal cortex interstitium
3
left renal pelvis
3
left ventricle myocardium
3
mesenchymal stem cell
3
mesothelial cell
3
naive T cell
3
neurosphere
3
nucleus accumbens
3
oligodendrocyte precursor cell
3
pancreatic A cell
3
pancreatic alpha cell
3
regulatory T cell
3
retinal pigment epithelial cell
3
right cardiac atrium
3
right renal cortex interstitium
3
right renal pelvis
3
schwann cell
3
skeletal muscle fiber
3
skeletal muscle tissue
3
testis
3
type B pancreatic cell
3
type I pneumocyte
3
upper lobe of left lung
2
22Rv1
2
Brodmann (1909) area 46
2
CD4-positive, alpha-beta T cell
2
CD8-positive, alpha-beta T cell
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
LNCaP clone FGC
2
Muller cell
2
NAMALWA cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
SK-N-DZ
2
SK-N-SH
2
T47D
2
alveolar macrophage
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
basal cell
2
basal cell of epidermis
2
brain microvascular endothelial cell
2
breast epithelium
bronchial epithelial cell
2
cardiac endothelial cell
2
cerebellar cortex
2
cholangiocyte
2
choroid plexus epithelial cell
2
ciliated cell
2
cingulate gyrus
2
club cell
2
colon goblet cell
2
colonic mucosa
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
Disease term
2
heart failure
Organ
5
connective tissue
Life stage
3
adult
1
unknown
Date released
2
May, 2024
2
September, 2022
1
November, 2021
Software used
2
chromhmm
1
macs
Lab
2
AMP-T2D consortium
2
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Project
4
AMP
1
ENCODE
RFA
2
AMP
2
AMP2
1
ENCODE3
annotation_type!
eQTL
biosample_term_name!
bronchial epithelial cell
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR095UPL
released
Annotation file set
: Candidate cis-Regulatory Elements (cCREs) of adipocyte derived from RV snATAC-seq
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR542XFW
released
Annotation file set
: Candidate cis-Regulatory Elements (cCREs) of adipocyte derived from LV snATAC-seq
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR148SNR
released
Annotation file set
: Chromatin states for BSS00039 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR379DHG
released
Annotation file set
: Chromatin states for BSS00038 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR987PCG
released
Annotation file set
: Accessible chromatin annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE