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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
chromatin state
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
4
ChIP-seq
3
DNase-seq
Available data
3
bed bed3+
1
bed bed9
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
cell line
Biosample term
3
colon epithelial cell
1
RKO
Organ
110
epithelium
66
connective tissue
42
vasculature
27
lung
24
skin of body
20
blood vessel
19
brain
19
kidney
18
lymph node
16
prostate gland
13
blood
13
bodily fluid
13
pancreas
12
artery
12
eye
12
musculature of body
11
bone element
11
extraembryonic component
8
bronchus
8
embryo
8
lymphatic vessel
8
mammary gland
6
liver
5
heart
4
bone marrow
4
esophagus
4
gonad
4
intestine
4
large intestine
4
mouth
4
placenta
4
spinal cord
4
testis
3
lymphoid tissue
Life stage
114
adult
100
embryonic
6
child
4
unknown
2
young adult
Date released
3
September, 2022
1
February, 2021
Software used
2
r
1
chromhmm
1
encode-ccres
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
annotation_type!
eQTL
biosample_term_name!
C1 segment of cervical spinal cord
Showing 4 of 4 results
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Download
FileSet
DSR635VAQ
released
Annotation file set
: Candidate regulatory elements for BSS00223 colon epithelial cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR344FOH
released
Annotation file set
: Target gene predictions for BSS00223 colon epithelial cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR024YCW
released
Annotation file set
: Chromatin states for BSS00223 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR837ODF
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE RKO
Lab:
AMP-T2D consortium
Project:
AMP