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Annotation type
1
accessible chromatin
1
caQTL
1
chromatin state
eQTL
1
gene expression
Annotation Category
2
cis-regulatory elements
1
Gene expression levels
1
Genetic variant effects
Annotation type Category
2
snATAC-seq
1
ChIP-seq
1
snRNA-seq
Available data
3
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
3
primary cell
1
cell line
Biosample term
6
adipocyte
4
skeletal muscle fiber
3
endothelial cell
3
mesenchymal stem cell
3
smooth muscle cell
3
type I muscle cell
3
type II muscle cell
2
ESC derived cell line
2
glial cell
2
leukocyte
2
neural cell
2
skeletal muscle satellite cell
1
CD34-PB
1
GM12878
1
H1-hESC
1
HepG2
1
K562
1
caudate nucleus
1
cingulate gyrus
1
colonic mucosa
1
duodenal mucosa
1
endothelial cell of umbilical vein
1
fibroblast of lung
1
islet of Langerhans
1
keratinocyte
1
layer of hippocampus
1
liver
1
mammary epithelial cell
1
mid-frontal lobe
1
mucosa of rectum
1
rectum smooth muscle tissue
1
skeletal muscle
1
skeletal muscle myoblast
1
stomach smooth muscle
1
subcutaneous adipose tissue
1
substantia nigra
1
temporal lobe
Organ
3
connective tissue
1
blood
1
bodily fluid
Date released
2
February, 2024
1
August, 2017
1
October, 2022
Software used
1
chromhmm
1
deeptools
1
eigenmt
1
macs
1
r
1
rasqual
1
samtools
1
umitools
Lab
111
AMP-T2D consortium
4
Stephen Parker, UMich
3
Jesse Engreitz, Stanford University
Project
4
AMP
RFA
3
AMP2
1
AMP
annotation_type!
eQTL
Showing 4 of 4 results
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FileSet
DSR450DUL
released
Annotation file set
: Chromatin site QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR847RRB
released
Annotation file set
: Cell type chromatin broad peaks and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR543XVO
released
Annotation file set
: Cell type gene expression mean TPM and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR418295
released
Annotation file set
: ChromHMM 13-state model for for human K562
Lab:
Stephen Parker, UMich
Project:
AMP