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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
gene expression
Annotation Category
1
Gene expression levels
1
cis-regulatory elements
Annotation type Category
1
RNA-seq
Available data
1
bed bed3+
1
bigWig
1
tsv
File set status
2
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
2
Homo sapiens
Biosample type
primary cell
1
in vitro differentiated cells
1
tissue
Biosample term
90
heart
85
stomach
80
kidney
71
brain
67
lung
67
muscle of arm
64
HeLa-S3
62
A549
62
small intestine
61
adrenal gland
59
placenta
58
muscle of leg
56
large intestine
54
H1-hESC
54
muscle of back
52
left lung
50
neural progenitor cell
48
thymus
45
right lung
43
hematopoietic multipotent progenitor cell
42
liver
42
right kidney
41
K562
40
renal cortex interstitium
40
renal pelvis
39
retina
left kidney
34
spinal cord
33
heart left ventricle
33
spleen
31
islet of Langerhans
27
adipose tissue
26
MCF-7
23
EndoC_BH1
23
body of pancreas
23
sigmoid colon
23
tibial nerve
21
adipocyte
21
pancreas
20
breast cancer cell
20
caudate nucleus
20
pigmented layer of retina
20
psoas muscle
19
HFFc6
19
coronary artery
19
heart right ventricle
19
ovary
18
gastrocnemius medialis
17
HepG2
17
embryonic stem cell
17
muscle of trunk
17
right atrium auricular region
17
thyroid gland
17
tibial artery
17
transverse colon
16
GM12878
16
H9
16
chorionic villus
16
induced pluripotent stem cell
16
testis
16
upper lobe of left lung
15
layer of hippocampus
15
omental fat pad
15
subcutaneous adipose tissue
14
ascending aorta
14
endocrine pancreas
14
skeletal muscle tissue
14
substantia nigra
13
Peyer's patch
13
aorta
13
cerebellum
13
frontal cortex
13
temporal lobe
12
left renal cortex interstitium
12
mesenchymal stem cell
12
neuroblastoma cell
12
prostate gland
11
Ammon's horn
11
breast epithelium
11
cardiac muscle cell
11
left cardiac atrium
11
left renal pelvis
11
right renal pelvis
10
22Rv1
10
Rhabdomyosarcoma
10
esophagus squamous epithelium
10
gastric cancer cell
10
lymphocyte
10
progenitor cell of endocrine pancreas
10
putamen
10
right renal cortex interstitium
10
thoracic aorta
10
trophoblast
9
HEK293
9
IMR-90
9
SK-N-DZ
9
SK-N-SH
9
cardiomyocytes
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
liposarcoma
9
parathyroid adenoma
9
tongue
8
B-lymphoblastoid cell line
8
GM06990
8
GM12864
8
GM12865
8
GM19240
8
HAP-1
8
HL-60
8
HT-29
8
KARPAS-422 cell
8
MM.1S
8
NAMALWA cell
8
cingulate gyrus
8
duodenal mucosa
8
endodermal cell
8
esophagus
8
esophagus muscularis mucosa
8
fibroblast cell line
8
globus pallidus
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
mesendoderm
8
pituitary stalk
8
vagina
7
AG04449 cell
7
AG04450 cell
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
BE(2)-C
7
BJ cell
7
CMK
7
Caco-2 cell
7
GM12875
7
GM19238
7
GM19239
7
GM23248
7
Jurkat
7
LHCN-M2
7
LNCaP clone FGC
7
LoVo cell
7
MG63
7
SK-N-MC
7
T47D
7
WERI-Rb-1
7
angular gyrus
7
cardiomyocytes (cardiac muscle cell)
7
chorion membrane
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
eye
7
neuronal stem cell
7
stomach smooth muscle
6
Brodmann (1909) area 46
6
Chondroid Chordoma
6
Daoy
6
GM08714
6
GM10248
6
GM10266
6
GM12891
6
GM12892
6
GM18507
6
H7-hESC
6
HCT116
6
HUES6
6
HUES8
6
HuH-7
6
KBM-7
6
LNCAP
6
OCI-LY7
6
PC-9
6
SJSA1
6
SW480
6
WI38
6
cardiac precursors (cardiac muscle cell)
6
chondrocyte
6
hESC cell
6
mesodermal cell
6
midbrain
6
middle frontal gyrus
6
mucosa of rectum
6
neuroblastoma cell line
6
occipital lobe
6
pancreatic ductal cell
6
right lobe of liver
6
superior temporal gyrus
6
urinary bladder
5
A172
5
A673
5
ACHN
5
Caki2
5
CyT49
5
Ewing sarcoma
5
GM04503
5
GM04504
5
H4
Organ
2
epithelium
Date released
1
February, 2024
1
May, 2021
Software used
1
macs
1
r
Lab
1
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Project
2
AMP
RFA
2
AMP
annotation_type!
eQTL
biosample_term_name!
left kidney
neutrophil
biosample_type!
primary cell
Showing 2 of 2 results
table-tab-icon
matrix-icon
Download
FileSet
DSR369PUU
released
Annotation file set
: accessible chromatin annotation from scATAC-seq of Endothelial
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR669UJX
released
Annotation file set
: Gene expression annotation of endothelial cell_EC ISL1-PECAM1+ on day 10 from embryonic stem cell
Lab:
AMP-T2D consortium
Project:
AMP