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Schema
Citing CMDGA
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Annotation type
1
target gene predictions
Annotation Category
1
Target gene links
Annotation type Category
1
Capture-C
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
stem cell
Biosample term
112
monocyte
85
heart
84
stomach
71
kidney
68
brain
67
muscle of arm
66
lung
64
HeLa-S3
62
A549
62
small intestine
60
adrenal gland
59
placenta
56
large intestine
56
muscle of leg
54
common myeloid progenitor, CD34-positive
54
muscle of back
52
left lung
48
CD8-positive, alpha-beta T cell
48
thymus
46
H1-hESC
45
right lung
44
neural progenitor cell
42
B cell
42
hematopoietic multipotent progenitor cell
42
right kidney
41
K562
40
renal cortex interstitium
40
renal pelvis
39
liver
38
retina
36
left kidney
34
spinal cord
32
CD4-positive, alpha-beta memory T cell
32
spleen
31
CD14-positive monocyte
31
endothelial cell
30
fibroblast
29
heart left ventricle
28
hepatocyte
26
MCF-7
25
adipocyte
25
adipose tissue
23
macrophage
23
sigmoid colon
23
smooth muscle cell
23
trophoblast cell
22
CD8-positive, alpha-beta memory T cell
22
foreskin keratinocyte
22
pericyte cell
21
T cell
21
keratinocyte
20
breast cancer cell
20
islet of Langerhans
20
mononuclear cell
20
natural killer cell
20
pancreas
20
pigmented layer of retina
20
psoas muscle
19
foreskin fibroblast
19
regulatory T cell
18
HFFc6
18
body of pancreas
18
gastrocnemius medialis
18
ovary
17
HepG2
17
cardiac muscle cell
17
endothelial cell of umbilical vein
17
mesenchymal stem cell
17
muscle of trunk
17
thyroid gland
17
transverse colon
16
GM12878
16
chorionic villus
16
fibroblast of cardiac tissue
16
fibroblast of lung
16
heart right ventricle
16
pancreatic ductal cell
16
retinal pigment epithelial cell
16
skeletal muscle myoblast
16
upper lobe of left lung
15
CD4-positive, alpha-beta T cell
15
H9
15
astrocyte
15
caudate nucleus
15
layer of hippocampus
15
mammary gland epithelial cell
15
testis
14
EndoC_BH1
14
T-helper 1 cell
14
coronary artery
14
endocrine pancreas
14
osteoblast
13
Peyer's patch
13
T-helper 17 cell
13
T-helper 2 cell
13
bronchial epithelial cell
13
neurosphere
13
pancreatic beta cell
13
skeletal muscle tissue
12
excitatory neuron
12
fibroblast of dermis
12
left renal cortex interstitium
12
mammary epithelial cell
12
neuroblastoma cell
12
neutrophil
12
pancreatic acinar cell
12
prostate gland
12
right atrium auricular region
12
skeletal muscle satellite cell
12
tibial artery
11
breast epithelium
11
embryonic stem cell
11
endothelial cell of hepatic sinusoid
11
epithelial cell of prostate
11
erythroblast
11
left renal pelvis
11
pancreatic alpha cell
11
pancreatic delta cell
11
right renal pelvis
10
22Rv1
10
Rhabdomyosarcoma
10
aorta
10
choroid plexus epithelial cell
10
esophagus squamous epithelium
10
gastric cancer cell
10
kidney tubule cell
10
left cardiac atrium
10
lymphocyte
10
neuronal stem cell
10
right renal cortex interstitium
10
skin fibroblast
10
substantia nigra
10
temporal lobe
10
trophoblast
9
SK-N-DZ
9
SK-N-SH
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
hepatic stellate cell
9
liposarcoma
9
naive thymus-derived CD4-positive, alpha-beta T cell
9
omental fat pad
9
parathyroid adenoma
9
tongue
8
B-lymphoblastoid cell line
8
GM12865
8
HEK293
8
IMR-90
8
NAMALWA cell
8
cingulate gyrus
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
endodermal cell
8
esophagus
8
esophagus muscularis mucosa
8
fibroblast cell line
8
globus pallidus
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
mesendoderm
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
skeletal muscle fiber
8
thoracic aorta
7
AG04449 cell
7
AG04450 cell
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
Ammon's horn
7
BE(2)-C
7
BJ cell
7
CD1c-positive myeloid dendritic cell
7
CD4-positive helper T cell
7
CMK
7
Caco-2 cell
7
GM06990
7
GM12864
7
HT-29
7
SK-N-MC
7
T47D
7
WERI-Rb-1
7
ascending aorta
7
cerebellum
7
chorion membrane
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
eye
7
fibroblast of pulmonary artery
7
foreskin melanocyte
7
frontal cortex
7
glomerular endothelial cell
7
kidney glomerular epithelial cell
7
mature neutrophil
7
putamen
7
renal cortical epithelial cell
Organ
1
brain
Date released
1
September, 2023
Software used
1
chicago
Lab
1
Struan F.A. Grant, CHOP
Project
1
AMP
RFA
1
AMP2
annotation_type!
eQTL
files.file_type!
bigBed bed9
tsv
organ_slims!
nerve
Showing 1 of 1 results
table-tab-icon
matrix-icon
Download
FileSet
DSR843RXV
released
Annotation file set
: Target gene annotation of open chromatin regions from promoter capture c of ESC (1frag and 4 frag)
Lab:
Struan F.A. Grant, CHOP
Project:
AMP