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Citing CMDGA
Clear Filters
Annotation type
eQTL
2
Fine-mapped variants
2
variant to gene
1
sQTL
Annotation Category
5
Genetic variant effects
Annotation type Category
5
RNA-seq
Available data
2
tsv
File set status
5
released
Organism
5
Homo sapiens
Biosample type
5
tissue
Biosample term
5
islet of Langerhans
Organ
5
pancreas
Date released
5
March, 2023
Software used
904
chromhmm
716
r
115
deseq2
25
seurat
24
gtex_finemapping_eQTL:caveman
24
gtex_finemapping_eQTL:caviar
24
gtex_finemapping_eQTL:dapg
16
deltasvm
13
macs
12
deeptools
12
samtools
12
umitools
9
salmon
6
limix
5
qTLtools
3
sqtlseeker
1
altius-index
1
fastqtl
1
minfi
1
peer
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
annotation_type!
eQTL
files.file_type!
bed bed3+
Showing 5 of 5 results
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Download
FileSet
DSR288NOE
released
Annotation file set
: Fine-mapped sQTL
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR795YSV
released
Annotation file set
: Fine-mapped eQTL
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR083JNZ
released
Annotation file set
: All significant variant-to-gene associations for phenotypes with a sQTL effect at FDR 1%.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR642HGW
released
Annotation file set
: All significant variant-to-gene associations for phenotypes with a eQTL effect at FDR 1%.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR615JGJ
released
Annotation file set
: Lead variant-to-phenotype associations identified using permutations. Contains data for all phenotypes (eGene/Junction) with an sQTL effect at FDR 1%.
Lab:
AMP-T2D consortium
Project:
AMP