Search – Common Metabolic Diseases Genome Atlas

Showing 25 of 462 results

FileSet
DSR485442
released
Annotation file set: The dataset contains differentially accessible cCREs between CAD and control in human visceral fat, derived from STARNET ATAC-seq data (milestone 17).
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR352861
released
Annotation file set: The dataset contains differentially expressed genes between CAD and control in human visceral fat, derived from STARNET RNA-seq data (milestone 17).
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR546806
released
Annotation file set: The dataset contains gene expression levels in human visceral fat, derived from STARNET RNA-seq data (milestone 17).
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR611486
released
Annotation file set: The dataset contains cCRE–target gene links in human visceral fat, predicted from STARNET ATAC-seq data with detailed annotation (milestone 17).
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR388902
released
Annotation file set: The dataset contains candidate cis-regulatory elements (cCREs) in human visceral fat, derived from STARNET ATAC-seq data (milestone 17).
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR307DUL
released
Annotation file set: This file contains fine-mapping results for cis-eQTLs, identifying likely causal variants from STARNET bulk RNA-seq milestone 16 in visceral fat
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR697QDJ
released
Annotation file set: This file contains fine-mapping results for cis-eQTLs, identifying likely causal variants from STARNET bulk RNA-seq milestone 16 in subcutaneous adipose tissue
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR754CQX
released
Annotation file set: Tissue-specific differentially expressed genes for CAD case/control status from STARNET bulk RNA seq data for visceral fat (FDR=10%)
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR895XAU
released
Annotation file set: Tissue-specific differentially expressed genes for CAD case/control status from STARNET bulk RNA seq data for subcutaneous adipose tissue (FDR=10%)
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR252BTF
released
Annotation file set: Tissue-specific gene expression from STARNET bulk RNA seq data for visceral fat
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR225KLD
released
Annotation file set: Tissue-specific gene expression from STARNET bulk RNA seq data for subcutaneous adipose tissue
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR614ZVC
released
Annotation file set: Accessible chromatin annotation of each cell type cluster identified from snRNA+snATAC profiling of human skeletal muscle - adipocyte
Lab: Stephen Parker, UMich
Project: AMP
FileSet
DSR020DGY
released
Annotation file set: Splicing Quantitative Trait Loci (sQTL) from human primary articular chondrocytes under fibronectin fragment (FN-f) performed using RNA-seq data from 101 samples.
Lab: Doug Phanstiel, UNC
Project: community
FileSet
DSR302PZQ
released
Annotation file set: Splicing Quantitative Trait Loci (sQTL) from human primary articular chondrocytes under hosphate buffer saline (PBS) resting performed using RNA-seq data from 101 samples.
Lab: Doug Phanstiel, UNC
Project: community
FileSet
DSR458YMM
released
Annotation file set: caQTL results in each cell type cluster identified from snRNA+snATAC profiling of human skeletal muscle - adipocyte
Lab: Stephen Parker, UMich
Project: AMP
FileSet
DSR128SRA
released
Annotation file set: Candidate cis-Regulatory Elements (cCREs) of hepatic stellate cell derived from liver snATAC-seq
Lab: Kyle Gaulton, UCSD
Project: AMP
FileSet
DSR064ENS
released
Annotation file set: Candidate cis-Regulatory Elements (cCREs) of fibroblast derived from liver snATAC-seq
Lab: Kyle Gaulton, UCSD
Project: AMP
FileSet
DSR167PUF
released
Annotation file set: Candidate cis-Regulatory Elements (cCREs) of pericyte cell derived from RV snATAC-seq
Lab: Kyle Gaulton, UCSD
Project: AMP
FileSet
DSR912ZCS
released
Annotation file set: Candidate cis-Regulatory Elements (cCREs) of fibroblast derived from RV snATAC-seq
Lab: Kyle Gaulton, UCSD
Project: AMP
FileSet
DSR095UPL
released
Annotation file set: Candidate cis-Regulatory Elements (cCREs) of adipocyte derived from RV snATAC-seq
Lab: Kyle Gaulton, UCSD
Project: AMP
FileSet
DSR504QNL
released
Annotation file set: Candidate cis-Regulatory Elements (cCREs) of pericyte cell derived from LV snATAC-seq
Lab: Kyle Gaulton, UCSD
Project: AMP
FileSet
DSR245GWZ
released
Annotation file set: Candidate cis-Regulatory Elements (cCREs) of fibroblast derived from LV snATAC-seq
Lab: Kyle Gaulton, UCSD
Project: AMP
FileSet
DSR542XFW
released
Annotation file set: Candidate cis-Regulatory Elements (cCREs) of adipocyte derived from LV snATAC-seq
Lab: Kyle Gaulton, UCSD
Project: AMP
FileSet
DSR242BFD
released
Annotation file set: accessible chromatin annotation from scATAC-seq of Quiescent Stellate
Lab: Kyle Gaulton, UCSD
Project: AMP
FileSet
DSR972BOL
released
Annotation file set: accessible chromatin annotation from scATAC-seq of Active Stellate
Lab: Kyle Gaulton, UCSD
Project: AMP