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Clear Filters
Annotation type
eQTL
2
caQTL
1
sQTL
Annotation Category
3
Genetic variant effects
Annotation type Category
2
ATAC-seq
1
Expression arrays
1
RNA-seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
2
GRCh38
1
hg19
Organism
3
Homo sapiens
Biosample type
2
primary cell
1
tissue
Biosample term
2
CD4-positive helper T cell
1
islet of Langerhans
Organ
1
pancreas
Life stage
1
adult
Date released
2
October, 2022
1
August, 2021
Software used
2546
macs
2383
r
1035
chromhmm
838
encode-ccres
250
abc
136
deltasvm
133
deseq2
32
cicero
27
chicago
27
nospecificsoft_customcode
25
seurat
24
gtex_finemapping_eQTL:caveman
24
gtex_finemapping_eQTL:caviar
24
gtex_finemapping_eQTL:dapg
19
qTLtools
18
samtools
14
hiccups
12
deeptools
12
limix
12
umitools
11
rasqual
9
salmon
6
eigenmt
3
matrix-eQTL
3
minfi
3
sqtlseeker
2
combined S2G strategy
2
fastqtl
2
mpraflow
2
peer
1
altius-index
1
bedops
1
betacells_cytokines_t1d
1
cisgenome
1
e-range
1
pepatac
1
spp
Lab
2
Stephen S. Rich Lab @UVA
1
AMP-T2D consortium
Project
2
T1D
1
AMP
Collection Tags
2
T1D
1
AMP
1
T2DKP
RFA
2
T1D
1
AMP
annotation_type!
eQTL
Showing 3 of 3 results
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Download
FileSet
DSR276ICN
released
Annotation file set
: sQTL annotation of islet of Langerhans from PMID:25201977
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR077VUE
released
Annotation file set
: full cis-caQTL stats for 10 T1D-associated regions
Lab:
Stephen S. Rich Lab @UVA
Project:
T1D
FileSet
DSR578KNM
released
Annotation file set
: nominally significant results from cis-caQTL scan
Lab:
Stephen S. Rich Lab @UVA
Project:
T1D