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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
2
caQTL
2
target gene predictions
1
histone modifications
Annotation Category
3
cis-regulatory elements
2
Genetic variant effects
2
Target gene links
Annotation type Category
5
ATAC-seq
3
DNase-seq
2
H3K27ac ChIP-Seq
1
ChIP-seq
Available data
7
bed bed3+
File set status
7
released
Genome assembly (visualization)
5
hg19
3
GRCh38
Organism
7
Homo sapiens
Biosample type
5
primary cell
2
in vitro differentiated cells
Biosample term
116
monocyte
87
heart
85
stomach
74
kidney
72
brain
67
lung
67
muscle of arm
64
HeLa-S3
63
small intestine
62
A549
61
adrenal gland
60
placenta
58
muscle of leg
56
large intestine
54
common myeloid progenitor, CD34-positive
54
muscle of back
52
left lung
48
CD8-positive, alpha-beta T cell
48
thymus
47
liver
45
B cell
45
H1-hESC
45
right lung
44
neural progenitor cell
42
hematopoietic multipotent progenitor cell
42
right kidney
40
K562
40
renal cortex interstitium
40
renal pelvis
39
retina
36
left kidney
35
fibroblast
35
spinal cord
33
heart left ventricle
33
islet of Langerhans
33
macrophage
33
spleen
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
31
endothelial cell
29
adipose tissue
26
MCF-7
25
hepatocyte
24
natural killer cell
24
pericyte cell
23
sigmoid colon
23
tibial nerve
23
trophoblast cell
22
CD8-positive, alpha-beta memory T cell
22
T cell
22
adipocyte
22
body of pancreas
22
foreskin keratinocyte
22
pancreas
22
smooth muscle cell
21
regulatory T cell
20
breast cancer cell
20
caudate nucleus
20
mononuclear cell
20
pigmented layer of retina
20
psoas muscle
19
coronary artery
19
foreskin fibroblast
19
keratinocyte
19
ovary
19
pancreatic ductal cell
18
HFFc6
18
endothelial cell of umbilical vein
18
gastrocnemius medialis
18
heart right ventricle
18
thyroid gland
18
transverse colon
17
cardiac muscle cell
17
embryonic stem cell
17
muscle of trunk
17
right atrium auricular region
17
tibial artery
16
HepG2
16
chorionic villus
16
fibroblast of cardiac tissue
16
retinal pigment epithelial cell
16
testis
16
upper lobe of left lung
15
CD4-positive, alpha-beta T cell
15
EndoC_BH1
15
GM12878
15
T-helper 1 cell
15
astrocyte
15
fibroblast of lung
15
layer of hippocampus
15
mammary gland epithelial cell
15
mesenchymal stem cell
15
neutrophil
15
omental fat pad
15
pancreatic beta cell
15
skeletal muscle tissue
15
substantia nigra
14
H9
14
T-helper 17 cell
14
T-helper 2 cell
14
ascending aorta
14
endocrine pancreas
14
osteoblast
14
prostate gland
14
putamen
14
skeletal muscle myoblast
14
subcutaneous adipose tissue
13
Peyer's patch
13
bronchial epithelial cell
13
cerebellum
13
neurosphere
13
pancreatic acinar cell
13
pancreatic alpha cell
12
aorta
12
excitatory neuron
12
fibroblast of dermis
12
frontal cortex
12
left renal cortex interstitium
12
lymphoblastoid cell line
12
neuroblastoma cell
12
neuronal stem cell
12
pancreatic delta cell
11
Ammon's horn
11
breast epithelium
11
endothelial cell of hepatic sinusoid
11
epithelial cell of prostate
11
erythroblast
11
left renal pelvis
11
mammary epithelial cell
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
right renal pelvis
10
22Rv1
10
Rhabdomyosarcoma
10
choroid plexus epithelial cell
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
gastric cancer cell
10
hepatic stellate cell
10
left cardiac atrium
10
lymphocyte
10
right renal cortex interstitium
10
skeletal muscle satellite cell
10
skin fibroblast
10
temporal lobe
10
thoracic aorta
10
trophoblast
9
SK-N-DZ
9
SK-N-SH
9
diffuse intrinsic pontine glioma
9
esophagus
9
kidney tubule cell
9
liposarcoma
9
parathyroid adenoma
9
tongue
8
B-lymphoblastoid cell line
8
GM12865
8
HEK293
8
IMR-90
8
NAMALWA cell
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
endodermal cell
8
fibroblast cell line
8
globus pallidus
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
mesendoderm
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
vagina
7
AG04449 cell
7
AG04450 cell
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
BE(2)-C
7
BJ cell
7
CD1c-positive myeloid dendritic cell
7
CD4-positive helper T cell
7
GM06990
7
GM12864
7
HT-29
7
SK-N-MC
7
T47D
7
WERI-Rb-1
7
angular gyrus
7
chorion membrane
7
cingulate gyrus
7
colonic mucosa
7
dermis lymphatic vessel endothelial cell
7
duodenal mucosa
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
eye
7
fibroblast of pulmonary artery
7
foreskin melanocyte
7
mast cell
7
mature neutrophil
Date released
2
May, 2021
2
October, 2022
1
February, 2021
1
February, 2024
1
June, 2020
Software used
2
abc
2
macs
2
matrix-eQTL
1
bedops
1
pepatac
Lab
3
Stephen S. Rich Lab @UVA
2
AMP-T2D consortium
2
Jesse Engreitz, Stanford University
Project
4
AMP
3
T1D
RFA
4
AMP
3
T1D
annotation_type!
gene expression
representative DNase hypersensitivity sites
lab.title!
Stephen Parker, UMich
Showing 7 of 7 results
table-tab-icon
matrix-icon
Download
FileSet
DSR077VUE
released
Annotation file set
: full cis-caQTL stats for 10 T1D-associated regions
Lab:
Stephen S. Rich Lab @UVA
Project:
T1D
FileSet
DSR578KNM
released
Annotation file set
: nominally significant results from cis-caQTL scan
Lab:
Stephen S. Rich Lab @UVA
Project:
T1D
FileSet
DSR204EGG
released
Annotation file set
: A canonical set of CD4+ T cell peaks
Lab:
Stephen S. Rich Lab @UVA
Project:
T1D
FileSet
DSR365EBN
released
Annotation file set
: Histone modifications annotation for Blood CD4+ from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR645VYT
released
Annotation file set
: enhancer-gene predicton of CD4-positive_helper_T_cell-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR397ZRH
released
Annotation file set
: enhancer-gene predicton of CD4-positive_helper_T_cell-Corces2016 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR209TYC
released
Annotation file set
: Accessible chromatin annotation for Blood CD4+ from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP