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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
2
target gene predictions
1
eQTL
gene expression
Annotation Category
3
cis-regulatory elements
2
Target gene links
1
Genetic variant effects
Annotation type Category
ChIP-seq
64
DNase-seq
2
ATAC-seq
2
H3K27ac ChIP-Seq
1
RNA-seq
Available data
5
bed bed3+
File set status
6
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
6
Homo sapiens
Biosample type
6
tissue
Biosample term
52
HeLa-S3
39
H1-hESC
31
endothelial cell
31
fibroblast
31
macrophage
28
islet of Langerhans
27
monocyte
25
retina
21
pericyte cell
21
smooth muscle cell
20
pigmented layer of retina
19
HFFc6
18
K562
16
liver
15
CD14-positive monocyte
15
pancreatic beta cell
15
pancreatic ductal cell
14
pancreatic acinar cell
14
pancreatic alpha cell
13
B cell
13
EndoC_BH1
13
adipocyte
13
excitatory neuron
13
hepatocyte
13
pancreatic delta cell
13
subcutaneous adipose tissue
12
coronary artery
12
kidney
11
T cell
11
astrocyte
11
neural progenitor cell
10
CD8-positive, alpha-beta T cell
10
natural killer cell
10
pancreas
10
pituitary stalk
10
right atrium auricular region
10
tibial artery
10
tibial nerve
9
adipose tissue
9
putamen
9
retinal pigment epithelial cell
8
GM12878
8
caudate nucleus
8
frontal cortex
8
glutamatergic neuron
8
heart
8
heart left ventricle
8
induced pluripotent stem cell
8
pancreatic stellate cell
8
regulatory T cell
7
Ammon's horn
7
H9
7
dendritic cell
7
embryonic stem cell
7
endothelial cell of lymphatic vessel
7
erythroblast
7
lymphoblastoid cell line
7
mesenchymal stem cell
7
naive thymus-derived CD4-positive, alpha-beta T cell
7
omental fat pad
7
skeletal muscle fiber
7
type II pneumocyte
6
CD4-positive helper T cell
6
SGBS preadipocytes
6
ascending aorta
6
body of pancreas
6
cerebellum
6
colon epithelial cell
6
cortical cell of adrenal gland
6
endothelial cell of hepatic sinusoid
6
enterocyte
6
iPSC derived cell line
6
keratinocyte
6
lymphocyte
6
mast cell
6
memory B cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
olfactory receptor cell
6
osteoblast
6
skeletal muscle satellite cell
6
stomach
6
substantia nigra
6
type I muscle cell
6
type II muscle cell
5
cardiac fibroblast
5
HUES8
5
adrenal gland
5
amygdala
5
anterior cingulate cortex
5
basal cell
5
brain
5
cardiac muscle cell
5
cerebellum (Hemisphere)
5
chondrocyte
5
endocardial cell
5
endothelial cell of umbilical vein
5
fibroblast of cardiac tissue
5
gabaergic neuron
5
hepatic stellate cell
5
hypothalamus
5
inhibitory neuron
5
myofibroblast cell
5
naive B cell
5
neutrophil
5
nucleus accumbens
5
psoas muscle
5
spleen
4
C1 segment of cervical spinal cord
4
CD4-positive, alpha-beta T cell
4
CyT49
4
HepG2
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
T-helper 1 cell
4
activated CD4-positive, alpha-beta T cell
4
blood vessel smooth muscle cell
4
cardiomyocytes (cardiac muscle cell)
4
cartilage tissue
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
enteric smooth muscle cell
4
gastrocnemius medialis(Muscle - Skeletal)
4
glomerular visceral epithelial cell
4
heart right ventricle
4
left ventricle myocardium
4
luminal epithelial cell of mammary gland
4
mammary gland epithelial cell
4
megakaryocyte
4
mesothelial cell
4
neuronal stem cell
4
ovary
4
pancreatic A cell
4
pancreatic endothelial cell
4
pancreatic polypeptide-secreting cell
4
right lobe of liver
4
skeletal muscle myoblast
4
skin fibroblast
4
small intestine
4
smooth muscle cell of the esophagus
4
spinal cord
thymus
4
type B pancreatic cell
4
type I pneumocyte
3
Jurkat
3
Schwann cell
3
T follicular helper cell
3
T-helper 17 cell
3
T-helper 2 cell
3
U937
3
activated CD8-positive, alpha-beta T cell
3
blood cell
3
brain pericyte
3
choroid plexus epithelial cell
3
ciliated cell
3
club cell
3
enteric neuron
3
globus pallidus
3
glomerular endothelial cell
3
goblet cell
3
kidney glomerular epithelial cell
3
medulla oblongata
3
mesendoderm
3
microglial cell
3
midbrain
3
muscle of leg
3
naive t cell
3
occipital lobe
3
oligodendrocyte
3
oligodendrocyte precursor cell
3
pancreatic MUC5B+ductal cell
3
pancreatic alpha+beta cell
3
pancreatic cycling alpha cell
3
pancreatic gamma+epsilon cell
3
pancreatic macrophage cell
3
pancreatic mast cell
3
pancreatic quiescent stellate cell
3
parietal cell
3
peptic cell
3
placenta
3
plasma cell
3
plasmacytoid dendritic cell
3
pons
3
renal cortical epithelial cell
3
renal pelvis
3
schwann cell
3
sigmoid colon
3
skin of body
3
smooth muscle cell of the coronary artery
3
superior temporal gyrus
3
thyroid follicular cell
3
thyroid gland
3
transverse colon
3
trophoblast cell
3
uterus
2
hindlimb muscle
2
muscle of leg
2
A549
2
Adaptive / Maladaptive / Repairing Fibroblast
2
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
2
Afferent / Efferent Arteriole Endothelial Cell
Organ
6
stomach
Date released
3
June, 2020
2
May, 2021
1
January, 2022
Software used
3
macs
2
abc
1
qTLtools
Lab
4
AMP-T2D consortium
2
Jesse Engreitz, Stanford University
Project
6
AMP
RFA
6
AMP
annotation_type!
gene expression
annotation_type_category!
ChIP-seq
biosample_term_name!
naive T cell
thymus
Showing 6 of 6 results
table-tab-icon
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Download
FileSet
DSR542EVP
released
Annotation file set
: stomach eQTL of studay GTEx from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR408DBU
released
Annotation file set
: enhancer-gene predicton of stomach_fetal-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR821UNZ
released
Annotation file set
: enhancer-gene predicton of stomach-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR355FEE
released
Annotation file set
: Accessible chromatin annotation for Digestive tract Stomach from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR769DZK
released
Annotation file set
: Accessible chromatin annotation for Digestive tract Gastric primary sample from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR936OND
released
Annotation file set
: Accessible chromatin annotation for Digestive tract Fetal stomach from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP