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Schema
Citing CMDGA
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Annotation type
1
accessible chromatin
Annotation Category
1
cis-regulatory elements
Annotation type Category
1
ATAC-seq
Available data
1
bed bed3+
1
bigWig
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
primary cell
Biosample term
45
CD8-positive, alpha-beta T cell
41
common myeloid progenitor, CD34-positive
27
B cell
27
CD14-positive monocyte
23
CD4-positive, alpha-beta memory T cell
16
regulatory T cell
15
CD8-positive, alpha-beta memory T cell
15
endothelial cell of umbilical vein
15
foreskin fibroblast
15
foreskin keratinocyte
15
monocyte
15
natural killer cell
14
mononuclear cell
14
trophoblast cell
13
CD4-positive, alpha-beta T cell
13
fibroblast of lung
13
mammary epithelial cell
13
skeletal muscle myoblast
12
T-helper 1 cell
12
endothelial cell
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
neutrophil
12
pancreatic ductal cell
11
T cell
11
keratinocyte
11
osteoblast
11
pancreatic alpha cell
11
pancreatic beta cell
11
pancreatic delta cell
10
T-helper 17 cell
10
T-helper 2 cell
10
bronchial epithelial cell
10
neurosphere
9
fibroblast of dermis
9
mature neutrophil
8
dermis blood vessel endothelial cell
8
hepatocyte
8
mammary gland epithelial cell
8
pancreatic acinar cell
7
epithelial cell of prostate
7
fibroblast
7
fibroblast of mammary gland
7
fibroblast of pulmonary artery
7
fibroblast of villous mesenchyme
7
macrophage
7
retinal pigment epithelial cell
6
CD1c-positive myeloid dendritic cell
6
T-cell
6
cardiac muscle cell
6
erythroblast
6
fibroblast of breast
6
fibroblast of cardiac tissue
6
kidney tubule cell
6
myoepithelial cell of mammary gland
6
naive T cell
6
pancreatic stellate cell
6
peripheral blood mononuclear cell
6
pulmonary artery endothelial cell
6
smooth muscle cell
5
CD14-positive, CD16-negative classical monocyte
5
alternatively activated macrophage
5
astrocyte
5
choroid plexus epithelial cell
5
epithelial cell of esophagus
5
epithelial cell of proximal tubule
5
foreskin melanocyte
5
glomerular endothelial cell
5
glomerular visceral epithelial cell
5
hepatic stellate cell
5
kidney glomerular epithelial cell
5
mesenchymal stem cell
5
myofibroblast cell
5
naive B cell
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
renal cortical epithelial cell
5
skeletal muscle satellite cell
5
skin fibroblast
5
tracheal epithelial cell
4
acute myeloid leukemia cell
4
aortic adventitial fibroblast
4
astrocyte of the cerebellum
4
astrocyte of the hippocampus
4
cardiac fibroblast
4
dermis lymphatic vessel endothelial cell
4
fibroblast of peridontal ligament
4
glutamatergic neuron
4
inflammatory macrophage
4
iris pigment epithelial cell
4
kidney epithelial cell
4
lung microvascular endothelial cell
4
memory B cell
4
non-pigmented ciliary epithelial cell
4
pancreatic endothelial cell
4
pancreatic polypeptide-secreting cell
4
preadipocyte
4
renal epithelial cell
4
skeletal muscle cell
4
skeletal muscle fiber
4
smooth muscle cell of the brain vasculature
4
type I muscle cell
4
type II muscle cell
3
Ishikawa
3
Th1 cell
3
Th17 cell
3
activated CD4-positive, alpha-beta T cell
3
aortic endothelial cell
3
astrocyte of the spinal cord
3
basal cell
3
bone marrow cell
3
brain microvascular endothelial cell
3
enterocyte
3
erythroid cell
3
fibroblast of gingiva
3
fibroblast of the aortic adventitia
3
fibroblast of the conjunctiva
3
kidney capillary endothelial cell
3
mast cell
3
megakaryocyte
3
mononuclear cell of bone marrow
3
myotube
3
neoplastic cell
3
pancreatic MUC5B+ductal cell
3
pancreatic alpha+beta cell
3
pancreatic cycling alpha cell
3
pancreatic gamma+epsilon cell
3
pancreatic macrophage cell
3
pancreatic mast cell
3
pancreatic quiescent stellate cell
3
pericyte cell
3
peripheral blood stem cell
3
plasma cell
3
plasmacytoid dendritic cell
3
pre-B acute lymphoblastic leukemia cell
3
pulmonary interstitial fibroblast
3
stromal cell of bone marrow
2
cardiac fibroblast
2
Adaptive / Maladaptive / Repairing Fibroblast
2
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
2
Adipose stromal cell
2
Afferent / Efferent Arteriole Endothelial Cell
2
B Cell
2
B-lymphocyte
2
CD34-positive, CD38-negative hematopoietic stem cell
2
CD4-positive helper T cell
2
Classical Dendritic Cell
2
Connecting Tubule Cell
2
Connecting Tubule Intercalated Cell Type A
2
Connecting Tubule Principal Cell
2
Cortical Thick Ascending Limb Cell
2
Cycling Endothelial Cell
2
Cycling Epithelial Cell
2
Cycling T Cell
2
Cytotoxic T Cell
2
Degenerative Connecting Tubule Cell
2
Degenerative Connecting Tubule Cell / Principal Cell
2
Degenerative Cortical Thick Ascending Limb Cell
2
Degenerative Distal Convoluted Tubule Cell
2
Degenerative Intercalated Cell Type A
2
Degenerative Peritubular Capillary Endothelial Cell
2
Degenerative Principal Cell
2
Degenerative Proximal Tubule Epithelial Cell
2
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
2
Degenerative Vascular Smooth Muscle Cell
2
Descending Thin Limb Cell Type 1
2
Distal Convoluted Tubule Cell Type 1
2
Fibroblast
2
Glomerular Capillary Endothelial Cell
2
Intercalated Cell Type A
2
Intercalated Cell Type B
2
Lymphatic Endothelial Cell
2
M2 Macrophage
2
Medullary Thick Ascending Limb Cell
2
Mesangial Cell
2
Monocyte
2
Monocyte-derived Cell
2
Myofibroblast
2
Natural Killer T Cell
2
Natural Killer T Cell Type 1
2
Natural Killer T Cell Type 2
2
Non-Classical Monocyte
2
Parietal Epithelial Cell
2
Peritubular Capillary Endothelial Cell
2
Plasma Cell
2
Plasmacytoid Dendritic Cell
2
Podocyte
2
Principal Cell
2
Proximal Tubule Epithelial Cell Segment 1 and 2
2
Proximal Tubule Epithelial Cell Segment 3
2
Regulatory T Cell
2
Renin-positive Juxtaglomerular Granular Cell
2
Rhabdoid Tumor of the Kidney
2
Schwann cell
2
T Cell
2
T follicular helper cell
2
Th2 cell
2
Transitional Principal-Intercalated Cell
2
Vascular Smooth Muscle Cell / Pericyte
2
activated CD8-positive, alpha-beta T cell
Organ
1
epithelium
1
kidney
Life stage
1
adult
Date released
1
August, 2021
Software used
1
macs
Lab
1
Katalin Susztak, Upenn
Project
1
AMP
RFA
1
AMP2
annotation_type!
gene expression
assembly!
GRCh38
Showing 1 of 1 results
table-tab-icon
matrix-icon
Download
FileSet
DSR366JKU
released
Annotation file set
: Accessible chromatin from Katalin Susztak 75kidney Project of PT-S1
Lab:
Katalin Susztak, Upenn
Project:
AMP