Clear Filters

Annotation type

3018target gene predictions
2638pQTL
1709candidate regulatory elements
1248accessible chromatin
977histone modifications
944chromatin state
817binding sites
gene expression
484differential activity
180eQTL
141variant allelic effects
74Fine-mapped variants
25caQTL
7sQTL
5hQTL
4variant to gene
3meQTL
3other
1representative DNase hypersensitivity sites

Annotation Category

5696cis-regulatory elements
3078Genetic variant effects
3018Target gene links
484Gene expression levels
2Others

Annotation type Category

5248ChIP-seq
4522DNase-seq
2638quantitative proteomics
515ATAC-seq
460snATAC-seq
259RNA-seq
189HiC
139H3K27ac ChIP-Seq
110single cell RNA-seq
47pCHi-C
42scRNA-seq
17Expression arrays
11snRNA-seq
5Capture-C
4RNA microarray
3DNA methylation profiling by array assay
1SNP-SELEX

Available data

8068bed bed3+
2911tsv
869bed bed9
537bigWig
40bigBed bed9
34bed bed9+
16bigBed narrowPeak
12bed bed3
12bed narrowPeak
4bam
3bed gappedPeak
3xls
2csv
2txt

File set status

12276released
1archived
1revoked

Genome assembly (visualization)

6990hg19
3896GRCh38
4hg18

Organism

12230Homo sapiens

Biosample type

5839tissue
3455primary cell
2538cell line
440in vitro differentiated cells
4stem cell

Biosample term

2635whole blood
120monocyte
106heart
106stomach
93fibroblast
88brain
88kidney
86head of caudate nucleus
84muscle of arm
82placenta
81endothelial cell
81lung
76A549
76adrenal gland
76small intestine
72macrophage
71muscle of leg
70CD8-positive, alpha-beta T cell
70large intestine
69muscle of back
68HeLa-S3
68T-cell
68smooth muscle cell
67left lung
66common myeloid progenitor, CD34-positive
64B cell
64CD4-positive, alpha-beta T cell
58dorsolateral prefrontal cortex
57thymus
56right lung
55stimulated activated CD4-positive, alpha-beta T cell
54hematopoietic multipotent progenitor cell
52right kidney
51renal cortex interstitium
50renal pelvis
49liver
49natural killer cell
48K562
48posterior cingulate gyrus
46H1-hESC
45T cell
45left kidney
45neural progenitor cell
44adipocyte
43heart left ventricle
42retina
41spinal cord
39CD14-positive monocyte
39hepatocyte
38cardiac muscle cell
38spleen
37CD4-positive, alpha-beta memory T cell
34islet of Langerhans
34pericyte
33MCF-7
33activated CD4-positive, alpha-beta T cell
33keratinocyte
32glutamatergic neuron
30astrocyte
29adipose tissue
28heart right ventricle
28naive thymus-derived CD4-positive, alpha-beta T cell
28ovary
28pancreas
28trophoblast cell
26CD8-positive, alpha-beta memory T cell
26body of pancreas
26neuron
26sigmoid colon
26tibial nerve
25T-helper 1 cell
25psoas muscle
25stimulated activated CD8-positive, alpha-beta memory T cell
24endothelial cell of lymphatic vessel
24foreskin keratinocyte
24gastrocnemius medialis
24pericyte cell
23H9
23T-helper 2 cell
23dendritic cell
23foreskin fibroblast
23pancreatic ductal cell
23upper lobe of left lung
22GABAergic neuron
22HCT116
22caudate nucleus
22endothelial cell of umbilical vein
22thyroid gland
21T-helper 17 cell
20breast cancer cell
20coronary artery
20mononuclear cell
20muscle of trunk
20testis
20tibial artery
20transverse colon
19HFFc6
19HepG2
19endocardial cell
19mesenchymal stem cell
19naive thymus-derived CD8-positive, alpha-beta T cell
19regulatory T cell
19right atrium auricular region
18hepatic stellate cell
18pigmented layer of retina
17Peyer's patch
17ascending aorta
17embryonic stem cell
17erythroblast
17fibroblast of lung
17mast cell
17omental fat pad
16GM12878
16chorionic villus
16fibroblast of cardiac tissue
16layer of hippocampus
16left renal cortex interstitium
16left renal pelvis
16substantia nigra
15EndoC_BH1
15activated T-cell
15bronchial epithelial cell
15mammary epithelial cell
15mammary gland epithelial cell
15osteoblast
15pancreatic beta cell
15prostate gland
15retinal pigment epithelial cell
14activated CD8-positive, alpha-beta memory T cell
14cerebellum
14endocrine pancreas
14frontal cortex
14right renal pelvis
14skeletal muscle myoblast
13aorta
13breast epithelium
13dermis blood vessel endothelial cell
13fibroblast of dermis
13neuronal stem cell
13neurosphere
13neutrophil
13pancreatic alpha cell
13putamen
13skeletal muscle tissue
12SK-N-DZ
12colonic mucosa
12epithelial cell of prostate
12excitatory neuron
12left cardiac atrium
12lymphoblastoid cell line
12neuroblastoma cell
12pancreatic delta cell
12skeletal muscle satellite cell
11Ammon's horn
11IMR-90
11SK-N-SH
11choroid plexus epithelial cell
11endothelial cell of hepatic sinusoid
11esophagus muscularis mucosa
11naive B cell
11pancreatic acinar cell
11subcutaneous adipose tissue
11thoracic aorta
10Rhabdomyosarcoma
10endodermal cell
10esophagus squamous epithelium
10foreskin melanocyte
10gastric cancer cell
10kidney tubule cell
10limb
10lymphocyte
10mesothelial cell
10right lobe of liver
10thyroid follicular cell
922Rv1
9GM06990
9HAP-1
9HT-29
9PC-9
9SK-N-MC
9WERI-Rb-1
9WI38
9diffuse intrinsic pontine glioma
9esophagus
9eye
9globus pallidus
9liposarcoma
9lower leg skin
9megakaryocyte
9oligodendrocyte
9progenitor cell
9temporal lobe
9tongue
8GM12864
8GM12865
8HEK293
8LNCaP clone FGC
8MM.1S
8NAMALWA cell
8OCI-LY7

Organ

3364blood
2865vasculature
2852bodily fluid
2835blood vessel
2658vein
884brain
699epithelium
554kidney
469connective tissue
466heart
439lung
375musculature of body
355intestine
294skin of body
271pancreas
239limb
224large intestine
216liver
205embryo
174extraembryonic component
160eye
138stomach
129adipose tissue
111muscle organ
104mammary gland
102bone element
101adrenal gland
97placenta
97small intestine
93thymus
91uterus
86prostate gland
80artery
73ureter
64penis
62gonad
62lymph node
62spleen
60__MARKER__
48spinal cord
46esophagus
46thyroid gland
31ovary
30testis
24skeleton
23lymphoid tissue
23nerve
20mouth
18lymphatic vessel
16bronchus
14breast
13bone marrow
12pituitary gland
12urinary bladder
11tongue
11vagina
5trachea
4nose
1embryonic structure
1gallbladder

Life stage

4628adult
1374embryonic
430unknown
422fetal
114child
75newborn
32young adult
30postnatal

Date released

2636February, 2025
2511September, 2022
2413February, 2021
1984July, 2026
333November, 2021
320May, 2026
299February, 2024
299May, 2021
289June, 2020
155May, 2020
117March, 2020
115September, 2023
106January, 2022
101October, 2022
79August, 2021
72January, 2020
57March, 2023
56January, 2021
49May, 2022
44November, 2022
40May, 2024
35August, 2017
33July, 2025
32February, 2023
26February, 2020
19April, 2020
14November, 2019
14October, 2019
9May, 2019
8April, 2019
3September, 2018
2January, 2025
2March, 2026
2November, 2020
1August, 2020
1August, 2022
1June, 2021

Software used

2558macs
1712r
1035chromhmm
838encode-ccres
250abc
139qTLtools
136deltasvm
117deseq2
34cicero
27chicago
27nospecificsoft_customcode
24gtex_eqtl:V8
24gtex_finemapping_eQTL:caveman
24gtex_finemapping_eQTL:caviar
24gtex_finemapping_eQTL:dapg
15limix
14hiccups
14matrix-eQTL
11rasqual
8fastqtl
6eigenmt
6samtools
5peer
5unknown
3mach2qtl
3minfi
3sqtlseeker
2combined S2G strategy
2emmax
2mpraflow
1altius-index
1bedops
1betacells_cytokines_t1d
1bimbam
1cisgenome
1e-range
1epacts
1fast-lmm
1haploview
1pepatac
1probabel
1snap
1spp

Encyclopedia version

1Adipocyte.narrowpeak.bed.gz Adipocyte.consensus_summit_features.bed.gz
1Endothelial.narrowpeak.bed.gz Endothelial.consensus_summit_features.bed.gz
1FAP.narrowpeak.bed.gz Mesenchymal_Stem_Cell.consensus_summit_features.bed.gz
1Macrophage.narrowpeak.bed.gz Macrophage.consensus_summit_features.bed.gz
1Neuromuscular_junction.narrowpeak.bed.gz Neuromuscular_junction.consensus_summit_features.bed.gz
1Neuronal.narrowpeak.bed.gz Neuronal.consensus_summit_features.bed.gz
1Satellite_Cell.narrowpeak.bed.gz Satellite_Cell.consensus_summit_features.bed.gz
1Smooth_Muscle.narrowpeak.bed.gz Smooth_Muscle.consensus_summit_features.bed.gz
1T_cell.narrowpeak.bed.gz T_cell.consensus_summit_features.bed.gz
1Type_1.narrowpeak.bed.gz Type_1.consensus_summit_features.bed.gz
1Type_2a.narrowpeak.bed.gz Type_2a.consensus_summit_features.bed.gz
1Type_2x.narrowpeak.bed.gz Type_2x.consensus_summit_features.bed.gz

Lab

10967AMP-T2D consortium
489Kyle Gaulton, UCSD
393Bing Ren, UCSD
139Jesse Engreitz, Stanford University
110KPMP
86Stephen Parker, UMich
21Katalin Susztak, Upenn
19Xin Sun, UCSD
15Ines Cebola, Imperial College London
9Anna Gloyn, Oxford
8Struan F.A. Grant, CHOP
5ITG
5Patrick T. Ellinor, Broad
4Doug Phanstiel, UNC
3Karen Mohlke, UNC
3Stephen S. Rich Lab @UVA
2Joseph Wu, Stanford

Project

11736AMP
333ENCODE
110KPMP
60T1D
19LungMap
15community
5ITG

Collection Tags

2635UK_Biobank
2499EpiMap
1848ChIP-Atlas
1458ENCODE-rE2G