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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
target gene predictions
2
accessible chromatin
gene expression
Annotation Category
4
Target gene links
2
cis-regulatory elements
Annotation type Category
3
ATAC-seq
3
snATAC-seq
2
DNase-seq
2
H3K27ac ChIP-Seq
Available data
6
bed bed3+
2
bigWig
File set status
6
released
Genome assembly (visualization)
6
hg19
2
GRCh38
Organism
6
Homo sapiens
Biosample type
6
primary cell
Biosample term
26
endothelial cell
26
fibroblast
18
pericyte cell
18
smooth muscle cell
17
macrophage
15
CD14-positive monocyte
13
pancreatic acinar cell
13
pancreatic ductal cell
12
endothelial cell of hepatic sinusoid
12
excitatory neuron
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
adipocyte
10
astrocyte
10
pituitary stalk
9
hepatocyte
8
induced pluripotent stem cell
8
kidney
8
pancreatic stellate cell
T cell
7
keratinocyte
7
skeletal muscle fiber
6
CD8-positive, alpha-beta T cell
6
colon epithelial cell
6
cortical cell of adrenal gland
6
dendritic cell
6
enterocyte
6
erythroblast
6
type II pneumocyte
5
CD4-positive helper T cell
5
inhibitory neuron
5
left cardiac atrium
5
skeletal muscle satellite cell
5
type I muscle cell
5
type II muscle cell
4
B cell
4
basal cell
4
blood vessel smooth muscle cell
4
cartilage tissue
4
enteric smooth muscle cell
4
gabaergic neuron
4
glutamatergic neuron
4
islet of Langerhans
4
liver
4
luminal epithelial cell of mammary gland
4
memory B cell
4
mesenchymal stem cell
4
mesothelial cell
4
pancreatic A cell
4
pancreatic endothelial cell
4
pancreatic polypeptide-secreting cell
4
smooth muscle cell of the esophagus
4
type B pancreatic cell
3
Schwann cell
3
endocardial cell
3
endothelial cell of lymphatic vessel
3
enteric neuron
3
fibroblast of cardiac tissue
3
goblet cell
3
mammary gland epithelial cell
3
mast cell
3
megakaryocyte
3
monocyte
3
myofibroblast cell
3
natural killer cell
3
oligodendrocyte precursor cell
3
pancreatic MUC5B+ductal cell
3
pancreatic alpha+beta cell
3
pancreatic cycling alpha cell
3
pancreatic gamma+epsilon cell
3
pancreatic macrophage cell
3
pancreatic mast cell
3
pancreatic quiescent stellate cell
3
parietal cell
3
peptic cell
3
schwann cell
3
thyroid follicular cell
3
type I pneumocyte
2
Adaptive / Maladaptive / Repairing Fibroblast
2
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
2
Afferent / Efferent Arteriole Endothelial Cell
2
B Cell
2
BJAB cell
2
CD4-positive, alpha-beta T cell
2
Classical Dendritic Cell
2
Connecting Tubule Cell
2
Connecting Tubule Intercalated Cell Type A
2
Connecting Tubule Principal Cell
2
Cortical Thick Ascending Limb Cell
2
Cycling Endothelial Cell
2
Cycling Epithelial Cell
2
Cycling T Cell
2
Cytotoxic T Cell
2
Degenerative Connecting Tubule Cell
2
Degenerative Connecting Tubule Cell / Principal Cell
2
Degenerative Cortical Thick Ascending Limb Cell
2
Degenerative Distal Convoluted Tubule Cell
2
Degenerative Intercalated Cell Type A
2
Degenerative Peritubular Capillary Endothelial Cell
2
Degenerative Principal Cell
2
Degenerative Proximal Tubule Epithelial Cell
2
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
2
Degenerative Vascular Smooth Muscle Cell
2
Descending Thin Limb Cell Type 1
2
Distal Convoluted Tubule Cell Type 1
2
ESC derived cell line
2
EndoC_BH1
2
Fibroblast
2
GM12878
2
Glomerular Capillary Endothelial Cell
2
H1-hESC
2
HepG2
2
Intercalated Cell Type A
2
Intercalated Cell Type B
2
Jurkat
2
K562
2
Lymphatic Endothelial Cell
2
M2 Macrophage
2
MCF 10A cell
2
Medullary Thick Ascending Limb Cell
2
Mesangial Cell
2
Monocyte
2
Monocyte-derived Cell
2
Muller cell
2
Myofibroblast
2
Natural Killer T Cell
2
Natural Killer T Cell Type 1
2
Natural Killer T Cell Type 2
2
Non-Classical Monocyte
2
Parietal Epithelial Cell
2
Peritubular Capillary Endothelial Cell
2
Plasma Cell
2
Plasmacytoid Dendritic Cell
2
Podocyte
2
Principal Cell
2
Proximal Tubule Epithelial Cell Segment 1 and 2
2
Proximal Tubule Epithelial Cell Segment 3
2
Regulatory T Cell
2
Renin-positive Juxtaglomerular Granular Cell
2
T Cell
2
T-cell
2
THP-1
2
Transitional Principal-Intercalated Cell
2
U937
2
Vascular Smooth Muscle Cell / Pericyte
2
activated CD4-positive, alpha-beta T cell
2
activated CD8-positive, alpha-beta T cell
2
adrenal gland
2
alveolar macrophage
2
articular chondrocyte
2
basal cell of epidermis
2
cardiac endothelial cell
2
cardiac muscle cell
2
ciliated cell
2
club cell
2
colon goblet cell
2
conventional dendritic cell
2
eccrine cell
2
endothelial cell of umbilical vein
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
epithelial cell of esophagus
2
fetal cardiomyocyte
2
fibroblast of lung
2
foveolar cell of stomach
2
glial cell
2
granular cell of epidermis
2
intestinal tuft cell
2
luteal cell
2
mammary epithelial cell
2
mature NK T cell
2
melanocyte
2
mesangial cell
2
microglial cell
2
myoepithelial cell
2
naive B cell
2
naive t cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
natural killer cell mediated cytotoxicity
2
non keratinizing barrier epithelial cell
2
non-classical monocyte
2
oligodendrocyte
2
paneth cell
2
plasma cell
2
plasmacytoid dendritic cell
2
regular atrial cardiac myocyte
2
regulatory T cell
2
respiratory goblet cell
2
skeletal muscle fibroblast
2
skeletal muscle myoblast
2
skin fibroblast
2
small intestine goblet cell
2
stellate neuron
2
stomach
2
stomach neuroendocrine cell
2
stromal cell
Date released
2
January, 2021
2
May, 2021
2
November, 2021
Software used
3
abc
2
macs
1
cicero
Lab
AMP-T2D consortium
2
Bing Ren, UCSD
2
Jesse Engreitz, Stanford University
2
Kyle Gaulton, UCSD
Project
2
AMP
2
ENCODE
2
T1D
RFA
2
AMP
2
ENCODE3
2
T1D
annotation_type!
gene expression
biosample_term_name!
T cell
lab.title!
AMP-T2D consortium
month_released!
April, 2020
Showing 6 of 6 results
table-tab-icon
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Download
FileSet
DSR786GAR
released
Annotation file set
: Target gene predictions of T Lymphocyte 1 (CD8+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR552LZW
released
Annotation file set
: Accessible chromatin annotation of T Lymphocyte 1 (CD8+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR485QCY
released
Annotation file set
: enhancer-gene predicton of CD8-positive_alpha-beta_T_cell-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR886AVL
released
Annotation file set
: enhancer-gene predicton of CD8-positive_alpha-beta_T_cell-Corces2016 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR813PSH
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of pancreatic_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR805RPA
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of pancreatic_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D