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Schema
Citing CMDGA
Clear Filters
Annotation type
gene expression
7
accessible chromatin
1
target gene predictions
Annotation Category
7
cis-regulatory elements
1
Target gene links
Annotation type Category
8
ATAC-seq
1
DNase-seq
1
H3K27ac ChIP-Seq
Available data
8
bed bed3+
File set status
8
released
Genome assembly (visualization)
8
hg19
Organism
8
Homo sapiens
Biosample type
8
cell line
Biosample term
103
monocyte
32
CD8-positive, alpha-beta T cell
15
CD14-positive monocyte
10
embryonic stem cell
10
pituitary stalk
7
EndoC_BH1
6
dendritic cell
5
naive thymus-derived CD4-positive, alpha-beta T cell
5
neutrophil
4
adipocyte
2
BJAB cell
2
CD4-positive helper T cell
2
Jurkat
2
MCF 10A cell
2
T-cell
2
THP-1
2
U937
2
adrenal gland
2
stomach
2
trophoblast cell
1
A549
1
A673
1
B cell
1
B cell, CD19-positive
1
CD56-positive, CD161-positive immature natural killer cell
1
GM12878
1
H1-hESC
1
H7-hESC
1
H9
1
HAP-1
1
HCT-116 cell
1
HT-29
1
HeLa-S3
1
HepG2
1
IMR-90
1
K562
1
KARPAS-422 cell
1
LNCAP
1
LoVo cell
1
MCF-7
1
MDA-MB-231 cell
1
MM.1S
1
NCCIT cell
1
OCI-LY7
1
PC-9
1
Panc1
1
SK-N-SH
1
adipose tissue
1
astrocyte
1
beige adipocyte
1
bipolar neuron
1
body of pancreas
1
breast epithelium
1
cardiac muscle cell
1
cardiac ventricle
1
common myeloid progenitor, CD34-positive
1
coronary artery
1
endothelial cell of umbilical vein
1
epithelial cell of prostate
1
erythroblast
1
fibroblast of arm
1
fibroblast of dermis
1
fibroblast of lung
1
foreskin fibroblast
1
gastrocnemius medialis
1
hepatocyte
1
iPS DF 19.11
1
induced pluripotent stem cell
1
islet of Langerhans
1
keratinocyte
1
large intestine
1
liver
1
macrophage
1
mammary epithelial cell
1
megakaryocyte-erythroid progenitor cell
1
mesenchymal stem cell
1
mesendoderm
1
muscle of leg
1
muscle of trunk
1
myotube
1
natural killer cell
1
neuronal stem cell
1
osteoblast
1
ovary
1
pancreas
1
pancreatic A cell
1
pancreatic acinar cell
1
pancreatic ductal cell
1
placenta
1
psoas muscle
1
sigmoid colon
1
skeletal muscle myoblast
1
small intestine
1
smooth muscle cell of the coronary artery
1
spinal cord
1
spleen
1
thymus
1
thyroid gland
1
transverse colon
1
type B pancreatic cell
1
uterus
1
white adipose tissue
Organ
7
epithelium
7
pancreas
1
brain
Date released
8
May, 2021
6
September, 2022
4
February, 2021
2
March, 2023
1
February, 2023
1
March, 2020
1
May, 2020
1
November, 2019
1
October, 2022
Software used
7
macs
6
deseq2
6
samtools
1
abc
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
annotation_type!
gene expression
Showing 8 of 8 results
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Download
FileSet
DSR072AWY
released
Annotation file set
: Accessible chromatin of ATAC-seq of EndoC-βH1 cytokine-treated for GSE123404
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR313PSZ
released
Annotation file set
: IFNα induces early changes in chromatin accessibility of GSE133219, stable open chromatin regions detected at 2 h(fast response)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR521RFR
released
Annotation file set
: IFNα induces early changes in chromatin accessibility of GSE133219, loss open chromatin regions detected at 2 h(fast response)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR062QKS
released
Annotation file set
: IFNα induces early changes in chromatin accessibility of GSE133219, gained open chromatin regions detected at 2 h(fast response)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR955RJH
released
Annotation file set
: IFNα induces early changes in chromatin accessibility of GSE133219, stable open chromatin regions detected at 24 h(late response)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR195HKC
released
Annotation file set
: IFNα induces early changes in chromatin accessibility of GSE133219, loss open chromatin regions detected at 24 h(late response)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR460ECL
released
Annotation file set
: IFNα induces early changes in chromatin accessibility of GSE133219, gained open chromatin regions detected at 24 h(late response)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR266GVV
released
Annotation file set
: enhancer-gene predicton of SK-N-SH-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP