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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
gene expression
1
target gene predictions
1
variant allelic effects
Annotation Category
2
cis-regulatory elements
1
Genetic variant effects
1
Target gene links
Annotation type Category
3
snATAC-seq
1
ATAC-seq
Available data
4
bed bed3+
4
bigWig
3
bigBed narrowPeak
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
89
monocyte
57
A549
40
common myeloid progenitor, CD34-positive
35
hematopoietic multipotent progenitor cell
26
B cell
25
liver
24
adrenal gland
22
retina
21
adipose tissue
21
stomach
20
body of pancreas
20
pigmented layer of retina
19
K562
19
MCF-7
19
spleen
19
tibial nerve
18
CD8-positive, alpha-beta T cell
17
caudate nucleus
16
gastrocnemius medialis
16
omental fat pad
16
sigmoid colon
16
thyroid gland
16
transverse colon
15
CD8-positive, alpha-beta memory T cell
15
mononuclear cell
15
natural killer cell
14
ascending aorta
14
heart left ventricle
14
pancreas
13
Peyer's patch
13
coronary artery
13
substantia nigra
13
tibial artery
13
upper lobe of left lung
12
CD14-positive monocyte
12
cerebellum
12
endocrine pancreas
12
islet of Langerhans
12
layer of hippocampus
12
ovary
12
psoas muscle
12
right atrium auricular region
12
subcutaneous adipose tissue
11
HeLa-S3
11
aorta
11
frontal cortex
11
temporal lobe
10
T cell
10
angular gyrus
10
endothelial cell of hepatic sinusoid
10
esophagus squamous epithelium
10
lower leg skin
10
putamen
9
Ammon's horn
9
CD4-positive, alpha-beta memory T cell
9
breast epithelium
9
endometrium adenocarcinoma
9
esophagus muscularis mucosa
9
immortal human breast epithelial cell line cell
9
kidney
9
parathyroid adenoma
9
skeletal muscle tissue
9
thoracic aorta
8
CD4-positive, alpha-beta T cell
8
T-helper 1 cell
8
cingulate gyrus
8
colonic mucosa
8
duodenal mucosa
8
esophagus
8
fibroblast of breast
8
kidney tubule cell
8
mucosa of rectum
8
muscle layer of colon
8
muscle layer of duodenum
8
myoepithelial cell of mammary gland
8
prostate gland
8
right lobe of liver
8
small intestine
8
stomach smooth muscle
8
testis
8
vagina
7
LNCaP clone FGC
7
T-helper 2 cell
7
T47D
7
gastroesophageal sphincter
7
regulatory T cell
6
Brodmann (1909) area 46
6
adipocyte
6
globus pallidus
6
hepatic stellate cell
6
hepatocyte
6
kidney glomerular epithelial cell
6
mammary gland epithelial cell
6
middle frontal gyrus
6
muscle cell
6
naive T cell
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
right cardiac atrium
5
GM12878
5
cerebellar cortex
5
dermis blood vessel endothelial cell
5
endothelial cell
5
fibroblast
5
fibroblast of lung
5
heart right ventricle
5
lung
5
mature neutrophil
5
medulla oblongata
5
mesenchymal stem cell
5
midbrain
5
neutrophil
5
pons
5
skeletal muscle satellite cell
5
subcutaneous abdominal adipose tissue
5
superior temporal gyrus
5
uterus
4
A172
4
ACC112
4
ACHN
4
C1 segment of cervical spinal cord
4
C4-2B
4
Caki2
4
DOHH2
4
GM04503
4
GM04504
4
GM23248
4
GM23338
4
H4
4
H54
4
HAP-1
4
HCT116
4
HL-60
4
HS-27A
4
HS-5
4
HT-29
4
HT1080
4
KBM-7
4
KMS-11
4
LHCN-M2
4
Loucy
4
M059J
4
MM.1S
4
NB4
4
NCI-H929
4
OCI-LY1
4
OCI-LY3
4
OCI-LY7
4
PC-3
4
RCC 7860
4
RPMI7951
4
RPMI8226
4
RWPE1
4
RWPE2
4
SJSA1
4
SK-MEL-5
4
SU-DHL-6
4
SW480
4
amygdala
4
anterior cingulate cortex
4
bipolar neuron
4
cartilage tissue
4
cerebellum (Hemisphere)
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
fibroblast of dermis
4
gastrocnemius medialis(Muscle - Skeletal)
4
glutamatergic neuron
4
heart
4
hypothalamus
4
iPS-11a
4
iPS-15b
4
iPS-18a
4
iPS-18c
4
iPS-20b
4
left ventricle myocardium
4
macrophage
4
mucosa of stomach
4
nucleus accumbens
4
occipital lobe
4
pancreatic alpha cell
4
pancreatic beta cell
4
peripheral blood mononuclear cell
4
skeletal muscle myoblast
4
urinary bladder
3
8988T
3
AG08395 cell
3
AG08396 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
AG20443
3
COLO829
3
Caco-2 cell
3
GM10248
3
GM10266
3
GM12875
3
GM19238
3
GM19239
3
GM19240
3
HPDE6-E6E7
3
HuH-7
Organ
4
epithelium
4
pancreas
Life stage
4
adult
1
unknown
Date released
2
February, 2021
1
February, 2024
1
October, 2019
Software used
2
macs
1
cicero
1
deltasvm
Lab
3
Kyle Gaulton, UCSD
1
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
annotation_type!
gene expression
Showing 4 of 4 results
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Download
FileSet
DSR110ITH
released
Annotation file set
: Pancreatic alpha cell accessible chromatin annotation of overlapping ATAC-seq sites from 5 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR014OEB
released
Annotation file set
: pancreatic alpha cell co-accessibility linking chromatin sites to gene promoters annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR884MOQ
released
Annotation file set
: Genetic variants with deltaSVM predictions in pancreatic alpha cell snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR593VJK
released
Annotation file set
: pancreatic alpha cell accessible chromatin annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP