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Schema
Citing CMDGA
Clear Filters
Annotation type
4
chromatin state
Annotation Category
4
cis-regulatory elements
Annotation type Category
4
ChIP-seq
Available data
bed bed3+
4
bed bed9
2
bigBed bed9
File set status
4
released
Genome assembly (visualization)
4
GRCh38
4
hg19
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
21
heart
20
brain
20
stomach
17
islet of Langerhans
17
lung
16
kidney
16
liver
16
muscle of arm
16
small intestine
adrenal gland
15
muscle of leg
15
placenta
13
large intestine
13
left lung
13
muscle of back
11
right kidney
11
right lung
11
thymus
9
adipose tissue
9
caudate nucleus
9
heart left ventricle
9
left kidney
9
renal cortex interstitium
9
renal pelvis
9
subcutaneous adipose tissue
9
tibial nerve
8
body of pancreas
8
coronary artery
8
putamen
8
spinal cord
8
substantia nigra
8
tibial artery
7
ascending aorta
7
cerebellum
7
frontal cortex
7
omental fat pad
7
right atrium auricular region
7
spleen
5
Ammon's horn
5
amygdala
5
anterior cingulate cortex
5
heart right ventricle
5
hypothalamus
5
nucleus accumbens
5
ovary
5
right lobe of liver
5
sigmoid colon
5
skeletal muscle tissue
5
thyroid gland
5
transverse colon
4
C1 segment of cervical spinal cord
4
angular gyrus
4
aorta
4
cerebellum (Hemisphere)
4
chorionic villus
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
endocrine pancreas
4
gastrocnemius medialis
4
gastrocnemius medialis(Muscle - Skeletal)
4
layer of hippocampus
4
left ventricle myocardium
4
muscle of trunk
4
psoas muscle
4
retina
4
skin of body
4
temporal lobe
4
testis
3
Peyer's patch
3
cartilage tissue
3
chorion membrane
3
esophagus
3
esophagus muscularis mucosa
3
left renal cortex interstitium
3
pancreas
3
prostate gland
3
right cardiac atrium
3
right renal cortex interstitium
3
thoracic aorta
3
upper lobe of left lung
3
vagina
2
Brodmann (1909) area 46
2
blood
2
breast epithelium
2
cingulate gyrus
2
colonic mucosa
2
duodenal mucosa
2
esophagus squamous epithelium
2
eye
2
germinal matrix
2
globus pallidus
2
left renal pelvis
2
limb
2
lower leg skin
2
medulla oblongata
2
midbrain
2
middle frontal gyrus
2
mucosa of rectum
2
muscle layer of colon
2
muscle layer of duodenum
2
parathyroid adenoma
2
pons
2
right renal pelvis
2
stomach smooth muscle
2
superior temporal gyrus
2
tongue
2
trophoblast
2
urinary bladder
2
uterus
2
visceral abdominal adipose tissue
1
Pancreatic islets
1
abdominal aorta artery
1
amnion
1
aorta wall
1
arm bone
1
breast
1
cerebellar cortex
1
cerebellar hemisphere
1
colon sigmoid
1
cortex
1
cortex of kidney
1
dorsolateral prefrontal cortex
1
embryonic facial prominence
1
esophagus mucosa
1
femur
1
gastroesophageal sphincter
1
germinal center
1
inferior parietal cortex
1
left cardiac atrium
1
leg bone
1
minor salivary gland
1
mucosa of stomach
1
occipital lobe
1
pituitary gland
1
rectum smooth muscle tissue
1
renal glomerulus
1
skeletal muscle
1
synovial joint
1
umbilical cord
Organ
4
brain
Life stage
4
adult
Date released
2
May, 2019
2
September, 2022
Software used
4
chromhmm
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
annotation_type!
gene expression
biosample_term_name!
adrenal gland
files.file_type!
bed bed3+
Showing 4 of 4 results
table-tab-icon
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Download
FileSet
DSR388ZII
released
Annotation file set
: Chromatin states for BSS00078 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR238SJX
released
Annotation file set
: Chromatin states for BSS00077 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR461MVG
released
Annotation file set
: ChromHMM 18-state model for angular gyrus from ENCODE ChIP-seq data. ROADMAP Brain Angular Gyrus Annotation
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR483MDQ
released
Annotation file set
: ChromHMM 15-state model for angular gyrus from ENCODE ChIP-seq data. ROADMAP Brain Angular Gyrus Annotation
Lab:
AMP-T2D consortium
Project:
AMP