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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Target gene links
Annotation type Category
2
snATAC-seq
1
ATAC-seq
Available data
3
bed bed3+
2
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
2
GRCh38
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
112
monocyte
54
common myeloid progenitor, CD34-positive
47
CD8-positive, alpha-beta T cell
38
B cell
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
29
endothelial cell
27
fibroblast
22
CD8-positive, alpha-beta memory T cell
22
pericyte cell
20
T cell
20
endothelial cell of umbilical vein
20
hepatocyte
20
mononuclear cell
19
foreskin keratinocyte
19
regulatory T cell
19
smooth muscle cell
18
macrophage
18
natural killer cell
18
trophoblast cell
17
keratinocyte
16
fibroblast of lung
16
foreskin fibroblast
16
pancreatic ductal cell
15
CD4-positive, alpha-beta T cell
15
T-helper 1 cell
15
astrocyte
15
osteoblast
15
pancreatic beta cell
15
skeletal muscle myoblast
14
neutrophil
14
pancreatic alpha cell
13
T-helper 17 cell
13
T-helper 2 cell
13
mammary epithelial cell
13
mammary gland epithelial cell
13
neurosphere
13
pancreatic acinar cell
13
pancreatic delta cell
12
bronchial epithelial cell
12
endothelial cell of hepatic sinusoid
12
excitatory neuron
12
fibroblast of cardiac tissue
12
fibroblast of dermis
12
naive thymus-derived CD4-positive, alpha-beta T cell
11
erythroblast
11
skeletal muscle satellite cell
10
dermis blood vessel endothelial cell
10
retinal pigment epithelial cell
9
epithelial cell of prostate
9
kidney tubule cell
9
mature neutrophil
9
naive T cell
9
skin fibroblast
8
fibroblast of breast
8
fibroblast of mammary gland
8
fibroblast of pulmonary artery
8
fibroblast of villous mesenchyme
8
glutamatergic neuron
8
hepatic stellate cell
8
myoepithelial cell of mammary gland
7
CD1c-positive myeloid dendritic cell
7
cardiac muscle cell
7
choroid plexus epithelial cell
7
epithelial cell of proximal tubule
7
glomerular endothelial cell
7
kidney glomerular epithelial cell
7
luminal epithelial cell of mammary gland
7
pulmonary artery endothelial cell
7
renal cortical epithelial cell
7
skeletal muscle fiber
7
type II pneumocyte
6
T-cell
6
astrocyte of the cerebellum
6
astrocyte of the hippocampus
6
colon epithelial cell
6
cortical cell of adrenal gland
6
dermis lymphatic vessel endothelial cell
6
enterocyte
6
epithelial cell of esophagus
6
foreskin melanocyte
6
glomerular visceral epithelial cell
6
kidney epithelial cell
6
memory B cell
6
mesenchymal stem cell
6
olfactory receptor cell
6
pancreatic stellate cell
6
peripheral blood mononuclear cell
6
skeletal muscle cell
6
smooth muscle cell of the brain vasculature
6
type I muscle cell
6
type II muscle cell
5
cardiac fibroblast
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
alternatively activated macrophage
5
basal cell
5
brain microvascular endothelial cell
5
fibroblast of peridontal ligament
5
gabaergic neuron
5
inhibitory neuron
5
iris pigment epithelial cell
5
kidney capillary endothelial cell
5
lung microvascular endothelial cell
5
mast cell
5
myofibroblast cell
5
naive B cell
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
non-pigmented ciliary epithelial cell
5
plasma cell
5
tracheal epithelial cell
4
acute myeloid leukemia cell
4
aortic adventitial fibroblast
4
aortic endothelial cell
4
astrocyte of the spinal cord
4
blood vessel smooth muscle cell
4
cardiac fibroblast
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
fibroblast of gingiva
4
fibroblast of the aortic adventitia
4
fibroblast of the conjunctiva
4
inflammatory macrophage
4
megakaryocyte
4
mesothelial cell
4
pancreatic endothelial cell
4
pancreatic polypeptide-secreting cell
4
preadipocyte
4
renal epithelial cell
4
smooth muscle cell of the esophagus
4
stromal cell of bone marrow
4
type I pneumocyte
3
Ishikawa
3
Th1 cell
3
Th17 cell
3
activated CD4-positive, alpha-beta T cell
3
adipocyte
3
amnion mesenchymal stem cell
3
amniotic stem cell
3
bone marrow cell
3
brain pericyte
3
ciliated cell
3
club cell
3
endocardial cell
3
enteric neuron
3
epidermal melanocyte
3
epithelial cell of amnion
3
erythroid cell
3
goblet cell
3
mammary stem cell
3
mononuclear cell of bone marrow
3
myotube
3
naive t cell
3
neoplastic cell
3
oligodendrocyte
3
oligodendrocyte precursor cell
3
pancreatic A cell
3
pancreatic MUC5B+ductal cell
3
pancreatic alpha+beta cell
3
pancreatic cycling alpha cell
3
pancreatic gamma+epsilon cell
3
pancreatic macrophage cell
3
pancreatic mast cell
3
pancreatic quiescent stellate cell
3
parietal cell
3
peptic cell
3
peripheral blood stem cell
3
plasmacytoid dendritic cell
3
pre-B acute lymphoblastic leukemia cell
3
pulmonary interstitial fibroblast
3
regular cardiac myocyte
3
schwann cell
3
thyroid follicular cell
3
type B pancreatic cell
2
Adaptive / Maladaptive / Repairing Fibroblast
2
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
2
Adipose stromal cell
2
Afferent / Efferent Arteriole Endothelial Cell
2
B Cell
2
B-lymphocyte
2
CD34-positive, CD38-negative hematopoietic stem cell
2
Classical Dendritic Cell
2
Connecting Tubule Cell
2
Connecting Tubule Intercalated Cell Type A
2
Connecting Tubule Principal Cell
2
Cortical Thick Ascending Limb Cell
2
Cycling Endothelial Cell
2
Cycling Epithelial Cell
2
Cycling T Cell
2
Cytotoxic T Cell
2
Degenerative Connecting Tubule Cell
2
Degenerative Connecting Tubule Cell / Principal Cell
2
Degenerative Cortical Thick Ascending Limb Cell
2
Degenerative Distal Convoluted Tubule Cell
2
Degenerative Intercalated Cell Type A
2
Degenerative Peritubular Capillary Endothelial Cell
2
Degenerative Principal Cell
2
Degenerative Proximal Tubule Epithelial Cell
Date released
2
November, 2021
1
April, 2020
Software used
1
abc
1
macs
Lab
2
Bing Ren, UCSD
1
Xin Sun, UCSD
Project
2
ENCODE
1
LungMap
RFA
2
ENCODE3
1
LungMap2
annotation_type!
gene expression
month_released!
February, 2023
January, 2022
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR489CBX
released
Annotation file set
: ATAC-seq peaks in ciliated cells from lung snATAC-seq
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR926GJY
released
Annotation file set
: Target gene predictions of Cilliated Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR662AOW
released
Annotation file set
: Accessible chromatin annotation of Cilliated Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE