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Schema
Citing CMDGA
Clear Filters
Annotation type
gene expression
1
target gene predictions
Annotation Category
1
Target gene links
Annotation type Category
1
pCHi-C
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
in vitro differentiated cells
Biosample term
62
stomach
60
HeLa-S3
59
heart
51
lung
50
muscle of arm
48
brain
47
small intestine
46
adrenal gland
45
kidney
42
placenta
41
common myeloid progenitor, CD34-positive
41
large intestine
41
muscle of back
41
muscle of leg
40
A549
40
H1-hESC
39
left lung
34
thymus
33
right lung
32
liver
32
right kidney
30
K562
30
renal cortex interstitium
29
hematopoietic multipotent progenitor cell
29
renal pelvis
27
B cell
27
CD14-positive monocyte
27
left kidney
24
islet of Langerhans
23
CD4-positive, alpha-beta memory T cell
23
spleen
22
spinal cord
21
heart left ventricle
20
adipose tissue
19
HFFc6
18
body of pancreas
16
macrophage
16
sigmoid colon
16
tibial nerve
15
CD8-positive, alpha-beta memory T cell
15
H9
15
MCF-7
15
foreskin keratinocyte
15
ovary
15
trophoblast cell
14
CD8-positive, alpha-beta T cell
14
caudate nucleus
14
coronary artery
14
natural killer cell
14
psoas muscle
14
transverse colon
13
T cell
13
gastrocnemius medialis
13
mononuclear cell
13
muscle of trunk
13
regulatory T cell
13
thyroid gland
12
T-helper 1 cell
12
chorionic villus
12
endothelial cell
12
endothelial cell of umbilical vein
12
fibroblast
12
heart right ventricle
12
omental fat pad
12
right atrium auricular region
12
smooth muscle cell
12
subcutaneous adipose tissue
12
substantia nigra
11
CD4-positive, alpha-beta T cell
11
T-helper 17 cell
11
T-helper 2 cell
11
adipocyte
11
ascending aorta
11
endocrine pancreas
11
monocyte
11
neutrophil
11
pericyte cell
11
skeletal muscle tissue
10
GM12878
10
Peyer's patch
10
cardiac muscle cell
10
cerebellum
10
fibroblast of lung
10
foreskin fibroblast
10
frontal cortex
10
layer of hippocampus
10
left renal cortex interstitium
10
mesenchymal stem cell
10
naive thymus-derived CD4-positive, alpha-beta T cell
10
pancreas
10
pituitary stalk
10
putamen
10
retina
10
testis
10
tibial artery
9
hepatocyte
9
keratinocyte
9
left renal pelvis
9
neurosphere
8
Ammon's horn
8
aorta
8
breast epithelium
8
dermis blood vessel endothelial cell
8
esophagus
8
esophagus muscularis mucosa
8
esophagus squamous epithelium
8
fibroblast of dermis
8
induced pluripotent stem cell
8
lower leg skin
8
lymphocyte
8
mammary gland epithelial cell
8
neural progenitor cell
8
pancreatic delta cell
8
right renal pelvis
8
upper lobe of left lung
7
SK-N-SH
7
epithelial cell of prostate
7
fibroblast of cardiac tissue
7
pancreatic acinar cell
7
skeletal muscle myoblast
6
22Rv1
6
HepG2
6
SK-N-DZ
6
T-cell
6
WI38
6
angular gyrus
6
astrocyte
6
bronchial epithelial cell
6
chorion membrane
6
cingulate gyrus
6
colonic mucosa
6
dendritic cell
6
duodenal mucosa
6
endodermal cell
6
endometrium adenocarcinoma
eye
6
fibroblast of breast
6
gastroesophageal sphincter
6
iPSC derived cell line
6
immortal human breast epithelial cell line cell
6
lymphoblastoid cell line
6
mucosa of rectum
6
muscle layer of duodenum
6
naive T cell
6
pancreatic alpha cell
6
pancreatic beta cell
6
parathyroid adenoma
6
prostate gland
6
right renal cortex interstitium
6
temporal lobe
6
thoracic aorta
5
CD4-positive helper T cell
5
EndoC_BH1
5
HCT116
5
LNCaP clone FGC
5
T47D
5
amygdala
5
anterior cingulate cortex
5
cerebellum (Hemisphere)
5
colon epithelial cell
5
epithelial cell of esophagus
5
foreskin melanocyte
5
hypothalamus
5
kidney tubule cell
5
limb
5
mesendoderm
5
muscle layer of colon
5
myoepithelial cell of mammary gland
5
nucleus accumbens
5
olfactory receptor cell
5
pancreatic ductal cell
5
right lobe of liver
5
tongue
5
trophoblast
4
A673
4
Brodmann (1909) area 46
4
C1 segment of cervical spinal cord
4
CyT49
4
HAP-1
4
HEK293
4
HT-29
4
HUES8
4
IMR-90
4
MM.1S
4
NAMALWA cell
4
OCI-LY7
4
PC-9
4
Panc1
4
astrocyte of the cerebellum
4
astrocyte of the hippocampus
4
basal cell
4
bipolar neuron
4
cardiomyocytes (cardiac muscle cell)
4
cartilage tissue
4
choroid plexus epithelial cell
4
dermis lymphatic vessel endothelial cell
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
epithelial cell of proximal tubule
4
fibroblast of the aortic adventitia
4
gastrocnemius medialis(Muscle - Skeletal)
Date released
1
March, 2020
Software used
macs
chromhmm
1
nospecificsoft_customcode
Lab
1
AMP-T2D consortium
Project
1
AMP
RFA
1
AMP
annotation_type!
gene expression
biosample_term_name!
eye
software_used.software.name!
chromhmm
macs
Showing 1 of 1 results
table-tab-icon
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Download
FileSet
DSR929DUM
released
Annotation file set
: A target gene prediction annotation in Human Human ES Cells of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP