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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
2
target gene predictions
Annotation Category
3
cis-regulatory elements
2
Target gene links
Annotation type Category
3
ATAC-seq
2
snATAC-seq
Available data
5
bed bed3+
2
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
4
GRCh38
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
113
monocyte
54
common myeloid progenitor, CD34-positive
45
CD8-positive, alpha-beta T cell
36
B cell
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
30
endothelial cell
29
fibroblast
26
macrophage
22
CD8-positive, alpha-beta memory T cell
22
T cell
22
pericyte cell
20
endothelial cell of umbilical vein
20
hepatocyte
20
mononuclear cell
19
foreskin keratinocyte
19
regulatory T cell
19
smooth muscle cell
18
natural killer cell
18
trophoblast cell
17
keratinocyte
16
astrocyte
16
fibroblast of lung
16
foreskin fibroblast
15
CD4-positive, alpha-beta T cell
15
neutrophil
15
osteoblast
15
skeletal muscle myoblast
14
T-helper 1 cell
13
mammary epithelial cell
13
mammary gland epithelial cell
13
naive thymus-derived CD4-positive, alpha-beta T cell
13
neurosphere
13
pancreatic ductal cell
12
T-helper 17 cell
12
T-helper 2 cell
12
bronchial epithelial cell
12
endothelial cell of hepatic sinusoid
12
excitatory neuron
12
fibroblast of cardiac tissue
12
fibroblast of dermis
12
pancreatic beta cell
11
erythroblast
11
pancreatic alpha cell
11
skeletal muscle satellite cell
10
dermis blood vessel endothelial cell
10
pancreatic acinar cell
10
pancreatic delta cell
10
retinal pigment epithelial cell
9
epithelial cell of prostate
9
kidney tubule cell
9
mature neutrophil
9
naive T cell
9
skin fibroblast
8
fibroblast of breast
8
fibroblast of mammary gland
8
fibroblast of pulmonary artery
8
fibroblast of villous mesenchyme
8
glutamatergic neuron
8
hepatic stellate cell
8
myoepithelial cell of mammary gland
7
CD1c-positive myeloid dendritic cell
7
cardiac muscle cell
7
choroid plexus epithelial cell
7
epithelial cell of proximal tubule
7
glomerular endothelial cell
7
kidney glomerular epithelial cell
7
luminal epithelial cell of mammary gland
7
pulmonary artery endothelial cell
7
renal cortical epithelial cell
7
skeletal muscle fiber
7
type II pneumocyte
6
T-cell
6
astrocyte of the cerebellum
6
astrocyte of the hippocampus
6
colon epithelial cell
6
cortical cell of adrenal gland
6
dermis lymphatic vessel endothelial cell
6
enterocyte
6
epithelial cell of esophagus
6
foreskin melanocyte
6
glomerular visceral epithelial cell
6
kidney epithelial cell
6
mesenchymal stem cell
6
olfactory receptor cell
6
peripheral blood mononuclear cell
6
skeletal muscle cell
6
smooth muscle cell of the brain vasculature
6
type I muscle cell
6
type II muscle cell
5
cardiac fibroblast
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
alternatively activated macrophage
5
basal cell
5
brain microvascular endothelial cell
5
fibroblast of peridontal ligament
5
fibroblast of the aortic adventitia
5
gabaergic neuron
5
inhibitory neuron
5
iris pigment epithelial cell
5
kidney capillary endothelial cell
5
lung microvascular endothelial cell
5
mast cell
5
myofibroblast cell
5
non-pigmented ciliary epithelial cell
5
tracheal epithelial cell
4
activated CD4-positive, alpha-beta T cell
4
acute myeloid leukemia cell
4
aortic adventitial fibroblast
4
aortic endothelial cell
4
astrocyte of the spinal cord
4
blood vessel smooth muscle cell
4
cardiac fibroblast
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
fibroblast of gingiva
4
fibroblast of the conjunctiva
4
inflammatory macrophage
4
megakaryocyte
4
memory B cell
4
mesothelial cell
4
naive thymus-derived CD8-positive, alpha-beta T cell
4
pancreatic polypeptide-secreting cell
4
plasma cell
4
preadipocyte
4
renal epithelial cell
4
smooth muscle cell of the esophagus
4
stromal cell of bone marrow
4
type I pneumocyte
3
Ishikawa
3
Th1 cell
3
Th17 cell
3
activated CD8-positive, alpha-beta T cell
3
adipocyte
3
amnion mesenchymal stem cell
3
amniotic stem cell
3
blood cell
3
bone marrow cell
3
brain pericyte
3
ciliated cell
3
club cell
3
endocardial cell
3
enteric neuron
3
epidermal melanocyte
3
epithelial cell of amnion
3
erythroid cell
3
goblet cell
3
mammary stem cell
3
microglial cell
3
mononuclear cell of bone marrow
3
myotube
3
naive B cell
3
naive t cell
3
neoplastic cell
3
oligodendrocyte
3
oligodendrocyte precursor cell
3
pancreatic A cell
3
pancreatic stellate cell
3
parietal cell
3
peptic cell
3
peripheral blood stem cell
3
pre-B acute lymphoblastic leukemia cell
3
pulmonary interstitial fibroblast
3
regular cardiac myocyte
3
schwann cell
3
thyroid follicular cell
3
type B pancreatic cell
2
Adipose stromal cell
2
B-lymphocyte
2
CD34-positive, CD38-negative hematopoietic stem cell
2
Muller cell
2
Rhabdoid Tumor of the Kidney
2
Schwann cell
2
Th2 cell
2
alveolar macrophage
2
basal cell of epidermis
2
capillary endothelial cell
2
cardiac endothelial cell
2
cardiac muscle myoblast
2
chronic lymphocytic leukemia cell
2
colon goblet cell
2
columnar chondrocyte
2
conventional dendritic cell
2
dermis microvascular lymphatic vessel endothelial cell
2
eccrine cell
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
erythroid progenitor cell
2
extracellular matrix secreting cell
2
fat cell
2
fetal cardiomyocyte
2
foveolar cell of stomach
2
glial cell
2
granular cell of epidermis
2
head and neck squamous cell carcinoma
2
intestinal tuft cell
2
leukemic stem cell
2
leukocyte
2
luteal cell
Life stage
1
adult
Date released
4
November, 2021
1
November, 2022
Software used
3
macs
2
abc
Lab
4
Bing Ren, UCSD
1
AMP-T2D consortium
Project
4
ENCODE
1
AMP
RFA
4
ENCODE3
1
AMP
annotation_type!
gene expression
files.file_type!
tsv
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR611RIB
released
Annotation file set
: Accessible chromatin of GABAergic neurons from four postmortem donors, three males and one female, ages 20–28 from a single brain collection.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR244BGI
released
Annotation file set
: Target gene predictions of GABAergic Neuron 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR282OSN
released
Annotation file set
: Target gene predictions of GABAergic Neuron 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR858CQC
released
Annotation file set
: Accessible chromatin annotation of GABAergic Neuron 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR771KJE
released
Annotation file set
: Accessible chromatin annotation of GABAergic Neuron 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE