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Schema
Citing CMDGA
Clear Filters
Annotation type
gene expression
3
accessible chromatin
2
candidate regulatory elements
1
chromatin state
1
target gene predictions
1
variant allelic effects
Annotation Category
6
cis-regulatory elements
1
Genetic variant effects
1
Target gene links
Annotation type Category
6
DNase-seq
4
ChIP-seq
1
ATAC-seq
Available data
7
bed bed3+
2
bigWig
1
bed bed9
File set status
8
released
Genome assembly (visualization)
8
hg19
2
GRCh38
Organism
8
Homo sapiens
Biosample type
6
primary cell
2
cell line
Biosample term
116
monocyte
87
heart
85
stomach
74
kidney
72
brain
67
lung
67
muscle of arm
64
HeLa-S3
63
small intestine
62
A549
61
adrenal gland
60
placenta
58
muscle of leg
56
large intestine
54
common myeloid progenitor, CD34-positive
54
muscle of back
52
left lung
48
CD8-positive, alpha-beta T cell
48
liver
48
thymus
46
H1-hESC
45
B cell
45
right lung
44
neural progenitor cell
42
hematopoietic multipotent progenitor cell
42
right kidney
41
K562
40
renal cortex interstitium
40
renal pelvis
39
retina
36
left kidney
35
fibroblast
35
spinal cord
34
endothelial cell
34
islet of Langerhans
33
heart left ventricle
33
macrophage
33
spleen
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
29
adipose tissue
27
adipocyte
26
MCF-7
25
hepatocyte
25
smooth muscle cell
24
natural killer cell
24
pericyte cell
23
sigmoid colon
23
tibial nerve
23
trophoblast cell
22
CD8-positive, alpha-beta memory T cell
22
T cell
22
body of pancreas
22
foreskin keratinocyte
22
pancreas
21
caudate nucleus
21
keratinocyte
21
regulatory T cell
20
breast cancer cell
20
mononuclear cell
20
pigmented layer of retina
20
psoas muscle
coronary artery
19
endothelial cell of umbilical vein
19
foreskin fibroblast
19
ovary
19
pancreatic ductal cell
18
HFFc6
18
gastrocnemius medialis
18
heart right ventricle
18
mesenchymal stem cell
18
thyroid gland
18
transverse colon
17
HepG2
17
cardiac muscle cell
17
embryonic stem cell
17
muscle of trunk
17
right atrium auricular region
17
tibial artery
16
chorionic villus
16
fibroblast of cardiac tissue
16
fibroblast of lung
16
layer of hippocampus
16
retinal pigment epithelial cell
16
subcutaneous adipose tissue
16
substantia nigra
16
testis
16
upper lobe of left lung
15
CD4-positive, alpha-beta T cell
15
EndoC_BH1
15
GM12878
15
T-helper 1 cell
15
astrocyte
15
mammary gland epithelial cell
15
neutrophil
15
omental fat pad
15
pancreatic beta cell
15
skeletal muscle myoblast
15
skeletal muscle tissue
14
H9
14
T-helper 17 cell
14
T-helper 2 cell
14
ascending aorta
14
endocrine pancreas
14
osteoblast
14
prostate gland
14
putamen
13
Peyer's patch
13
bronchial epithelial cell
13
cerebellum
13
neurosphere
13
pancreatic acinar cell
13
pancreatic alpha cell
12
aorta
12
excitatory neuron
12
fibroblast of dermis
12
frontal cortex
12
left renal cortex interstitium
12
lymphoblastoid cell line
12
mammary epithelial cell
12
neuroblastoma cell
12
neuronal stem cell
12
pancreatic delta cell
11
Ammon's horn
11
breast epithelium
11
endothelial cell of hepatic sinusoid
11
epithelial cell of prostate
11
erythroblast
11
left renal pelvis
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
right renal pelvis
11
skeletal muscle satellite cell
11
temporal lobe
10
22Rv1
10
Rhabdomyosarcoma
10
choroid plexus epithelial cell
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
gastric cancer cell
10
hepatic stellate cell
10
left cardiac atrium
10
lymphocyte
10
right renal cortex interstitium
10
skin fibroblast
10
thoracic aorta
10
trophoblast
9
SK-N-DZ
9
SK-N-SH
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
esophagus
9
kidney tubule cell
9
liposarcoma
9
parathyroid adenoma
9
tongue
8
B-lymphoblastoid cell line
8
GM12865
8
HEK293
8
IMR-90
8
NAMALWA cell
8
cingulate gyrus
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
endodermal cell
8
fibroblast cell line
8
globus pallidus
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
mesendoderm
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
vagina
7
AG04449 cell
7
AG04450 cell
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
BE(2)-C
7
BJ cell
7
CD1c-positive myeloid dendritic cell
7
CD4-positive helper T cell
7
GM06990
7
GM12864
7
HT-29
7
SK-N-MC
7
T47D
7
WERI-Rb-1
7
angular gyrus
7
chorion membrane
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
eye
7
fibroblast of pulmonary artery
7
foreskin melanocyte
7
mast cell
7
mature neutrophil
Organ
8
epithelium
8
kidney
Life stage
4
child
1
adult
1
young adult
Date released
3
September, 2022
1
August, 2021
1
February, 2021
1
January, 2020
1
June, 2020
1
May, 2020
Software used
3
macs
2
r
1
chromhmm
1
deltasvm
1
encode-ccres
Lab
7
AMP-T2D consortium
1
Katalin Susztak, Upenn
Project
8
AMP
RFA
7
AMP
1
AMP2
annotation_type!
gene expression
biosample_term_name!
coronary artery
Showing 8 of 8 results
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Download
FileSet
DSR003INP
released
Annotation file set
: Candidate regulatory elements for BSS00389 glomerular visceral epithelial cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR691IPC
released
Annotation file set
: Target gene predictions for BSS00389 glomerular visceral epithelial cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR420PUK
released
Annotation file set
: Chromatin states for BSS00389 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR236ODB
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE glomerular visceral epithelial cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR884VIR
released
Annotation file set
: Accessible chromatin from Katalin Susztak 75kidney Project of Podocytes
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR012KGK
released
Annotation file set
: Accessible chromatin annotation for Kidney Glomerular visceral epithelial cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR372RJW
released
Annotation file set
: Genetic variants with deltaSVM predictions in kidney podocyte DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR855KHX
released
Annotation file set
: Accessible chromatin annotation of kidney podocytes (glomerular visceral epithelial cell) from GSE115961 DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP