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Schema
Citing CMDGA
Clear Filters
Annotation type
1
chromatin state
gene expression
Annotation Category
1
cis-regulatory elements
Annotation type Category
1
ChIP-seq
Available data
bed bed3+
1
bed bed9
File set status
1
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
1
Homo sapiens
Biosample type
1
in vitro differentiated cells
Biosample term
20
brain
20
heart
16
lung
16
muscle of arm
15
muscle of leg
15
placenta
15
stomach
14
small intestine
13
islet of Langerhans
13
kidney
13
large intestine
13
left lung
13
muscle of back
11
right kidney
11
right lung
11
thymus
adrenal gland
9
left kidney
9
renal cortex interstitium
9
renal pelvis
8
spinal cord
7
induced pluripotent stem cell
7
liver
7
macrophage
6
CD4-positive, alpha-beta memory T cell
6
embryonic stem cell
6
heart left ventricle
6
lymphoblastoid cell line
5
endothelial cell of umbilical vein
5
neural progenitor cell
5
trophoblast cell
4
T-helper 17 cell
4
chorionic villus
4
foreskin keratinocyte
4
heart right ventricle
4
muscle of trunk
4
skin of body
3
CD14-positive, CD16-negative classical monocyte
3
EndoC_BH1
3
T cell
3
blood cell
3
chorion membrane
3
common myeloid progenitor, CD34-positive
3
left renal cortex interstitium
3
monocyte
3
neurosphere
3
neutrophil
3
pancreatic MUC5B+ductal cell
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic alpha+beta cell
3
pancreatic beta cell
3
pancreatic cycling alpha cell
3
pancreatic delta cell
3
pancreatic ductal cell
3
pancreatic endothelial cell
3
pancreatic gamma+epsilon cell
3
pancreatic macrophage cell
3
pancreatic mast cell
3
pancreatic quiescent stellate cell
3
pancreatic stellate cell
3
regulatory T cell
3
retina
3
right renal cortex interstitium
3
spleen
2
22Rv1
2
B cell
2
CD8-positive, alpha-beta memory T cell
2
NAMALWA cell
2
SK-N-DZ
2
SK-N-SH
2
T-helper 1 cell
2
T-helper 2 cell
2
adipose tissue
2
adipose-derived stem cell
2
alternatively activated macrophage
2
bronchial epithelial cell
2
dermis lymphatic vessel endothelial cell
2
differentiating adipose-derived stem cell
2
endodermal cell
2
epithelial cell of prostate
2
erythroblast
2
eye
2
fibroblast
2
fibroblast of cardiac tissue
2
fibroblast of dermis
2
fibroblast of lung
2
foreskin fibroblast
2
germinal matrix
2
glomerular endothelial cell
2
hepatocyte
2
iPSC derived cell line
2
keratinocyte
2
kidney capillary endothelial cell
2
left renal pelvis
2
limb
2
mature neutrophil
2
muscle
2
ovary
2
putamen
2
right renal pelvis
2
skeletal muscle myoblast
2
skeletal muscle tissue
2
skin fibroblast
2
substantia nigra
2
testis
2
tongue
2
trophoblast
1
A673
1
AG04449 cell
1
AG04450 cell
1
BE(2)-C
1
BJ cell
1
BL-2 cell
1
CD14-positive monocyte
1
CD1c-positive myeloid dendritic cell
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD8-positive, alpha-beta T cell
1
CMK
1
CWRU1
1
DG-75 cell
1
DND-41
1
Daoy
1
EH
1
EL
1
ELF-1
1
ELR
1
ES-I3
1
G401
1
GM03348
1
GM06990
1
GM08714
1
GM12864
1
GM12865
1
GM12891
1
GM12892
1
GM18507
1
H1-hESC
1
H7-hESC
1
H9
1
HEK293
1
HEK293T
1
HK-2 cell
1
HTR-8/Svneo
1
HUES48
1
HUES6
1
HUES64
1
HepG2
1
IMR-90
1
JVM-2 cell
1
KARPAS-422 cell
1
KOPT-K1
1
L1-S8
1
L1-S8R
1
Leydig cell
1
MG63
1
NCI-H460 cell
1
NT2-D1 cell
1
PC-9
1
Panc1
1
Pancreatic islets
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
SJCRH30
1
SK-N-MC
1
SUDHL5
1
T follicular helper cell
1
U-266 cell
1
UCSF-4
1
WERI-Rb-1
1
WI38
1
Z-138
1
abdominal aorta artery
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
adipocyte
1
amnion
1
amnion mesenchymal stem cell
1
amniotic stem cell
1
amygdala
1
anterior cingulate cortex
1
arm bone
1
astrocyte
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
astrocyte of the spinal cord
1
brain microvascular endothelial cell
1
breast
1
cardiac mesoderm primordium
1
cardiac muscle cell
1
caudate nucleus
1
cerebellar hemisphere
1
cerebellum
1
choroid plexus epithelial cell
1
colon carcinoma
1
colon epithelial cell
1
colon sigmoid
1
coronary artery
1
cortex
1
cortex of kidney
1
dermis blood vessel endothelial cell
Life stage
adult
1
unknown
Date released
1
September, 2022
Software used
1
chromhmm
Lab
1
AMP-T2D consortium
Project
1
AMP
RFA
1
AMP
annotation_type!
gene expression
biosample_term_name!
adrenal gland
files.file_type!
bed bed3+
relevant_life_stage!
adult
Showing 1 of 1 results
table-tab-icon
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Download
FileSet
DSR841XEM
released
Annotation file set
: Chromatin states for BSS00543 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP