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Schema
Citing CMDGA
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Annotation type
1
accessible chromatin
1
caQTL
1
candidate regulatory elements
1
chromatin state
1
eQTL
gene expression
Annotation Category
3
cis-regulatory elements
2
Genetic variant effects
Annotation type Category
2
ChIP-seq
2
snATAC-seq
1
DNase-seq
1
RNA-seq
Available data
5
bed bed3+
1
bed bed9
1
bigBed bed9
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
11
in vitro differentiated cells
5
primary cell
1
stem cell
Biosample term
99
monocyte
54
common myeloid progenitor, CD34-positive
43
CD8-positive, alpha-beta T cell
35
B cell
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
22
CD8-positive, alpha-beta memory T cell
20
endothelial cell
20
mononuclear cell
19
endothelial cell of umbilical vein
19
foreskin keratinocyte
19
natural killer cell
18
fibroblast
18
macrophage
18
regulatory T cell
18
trophoblast cell
17
T cell
16
fibroblast of lung
16
foreskin fibroblast
15
keratinocyte
15
neutrophil
14
CD4-positive, alpha-beta T cell
14
T-helper 1 cell
14
hepatocyte
14
pericyte cell
14
skeletal muscle myoblast
14
smooth muscle cell
13
mammary epithelial cell
13
neurosphere
12
T-helper 17 cell
12
T-helper 2 cell
12
bronchial epithelial cell
12
fibroblast of dermis
12
mammary gland epithelial cell
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
osteoblast
11
pancreatic ductal cell
10
dermis blood vessel endothelial cell
10
endothelial cell of hepatic sinusoid
10
fibroblast of cardiac tissue
9
epithelial cell of prostate
9
mature neutrophil
9
naive T cell
8
astrocyte
8
fibroblast of breast
8
fibroblast of mammary gland
8
fibroblast of pulmonary artery
8
fibroblast of villous mesenchyme
8
kidney tubule cell
8
myoepithelial cell of mammary gland
8
retinal pigment epithelial cell
8
skin fibroblast
7
CD1c-positive myeloid dendritic cell
7
hepatic stellate cell
7
mast cell
7
pancreatic acinar cell
7
pancreatic delta cell
7
pulmonary artery endothelial cell
7
skeletal muscle satellite cell
6
T-cell
6
cardiac muscle cell
6
choroid plexus epithelial cell
6
dermis lymphatic vessel endothelial cell
6
epithelial cell of esophagus
6
epithelial cell of proximal tubule
6
erythroblast
6
foreskin melanocyte
6
glomerular endothelial cell
6
glutamatergic neuron
6
kidney glomerular epithelial cell
6
olfactory receptor cell
6
pancreatic alpha cell
6
pancreatic beta cell
6
peripheral blood mononuclear cell
6
renal cortical epithelial cell
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
alternatively activated macrophage
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
fibroblast of peridontal ligament
5
fibroblast of the aortic adventitia
5
glomerular visceral epithelial cell
5
iris pigment epithelial cell
5
kidney epithelial cell
5
luminal epithelial cell of mammary gland
5
lung microvascular endothelial cell
5
mesenchymal stem cell
5
myofibroblast cell
5
non-pigmented ciliary epithelial cell
5
skeletal muscle cell
5
smooth muscle cell of the brain vasculature
5
tracheal epithelial cell
4
acute myeloid leukemia cell
4
adipocyte
4
aortic adventitial fibroblast
4
astrocyte of the spinal cord
4
brain microvascular endothelial cell
4
cardiac fibroblast
4
endothelial cell of lymphatic vessel
4
fibroblast of gingiva
4
fibroblast of the conjunctiva
4
inflammatory macrophage
4
kidney capillary endothelial cell
4
neuronal stem cell
4
pancreatic stellate cell
4
preadipocyte
4
renal epithelial cell
4
skeletal muscle fiber
4
stromal cell of bone marrow
4
type I muscle cell
4
type II muscle cell
3
Ishikawa
3
Th1 cell
3
Th17 cell
3
activated CD4-positive, alpha-beta T cell
3
amnion mesenchymal stem cell
3
amniotic stem cell
3
basal cell
3
blood cell
3
bone marrow cell
3
colon epithelial cell
3
cortical cell of adrenal gland
3
endocardial cell
3
enterocyte
3
epidermal melanocyte
3
epithelial cell of amnion
3
erythroid cell
3
gabaergic neuron
3
mammary stem cell
3
mononuclear cell of bone marrow
3
myotube
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
neoplastic cell
3
pancreatic A cell
3
pancreatic MUC5B+ductal cell
3
pancreatic alpha+beta cell
3
pancreatic cycling alpha cell
3
pancreatic endothelial cell
3
pancreatic gamma+epsilon cell
3
pancreatic macrophage cell
3
pancreatic mast cell
3
pancreatic quiescent stellate cell
3
peripheral blood stem cell
3
plasma cell
3
pre-B acute lymphoblastic leukemia cell
3
pulmonary interstitial fibroblast
3
regular cardiac myocyte
3
type B pancreatic cell
3
type II pneumocyte
2
cardiac fibroblast
2
Adaptive / Maladaptive / Repairing Fibroblast
2
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
2
Adipose stromal cell
2
Afferent / Efferent Arteriole Endothelial Cell
2
B Cell
2
B-lymphocyte
2
CD34-positive, CD38-negative hematopoietic stem cell
2
Classical Dendritic Cell
2
Connecting Tubule Cell
2
Connecting Tubule Intercalated Cell Type A
2
Connecting Tubule Principal Cell
2
Cortical Thick Ascending Limb Cell
2
Cycling Endothelial Cell
2
Cycling Epithelial Cell
2
Cycling T Cell
2
Cytotoxic T Cell
2
Degenerative Connecting Tubule Cell
2
Degenerative Connecting Tubule Cell / Principal Cell
2
Degenerative Cortical Thick Ascending Limb Cell
2
Degenerative Distal Convoluted Tubule Cell
2
Degenerative Intercalated Cell Type A
2
Degenerative Peritubular Capillary Endothelial Cell
2
Degenerative Principal Cell
2
Degenerative Proximal Tubule Epithelial Cell
2
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
2
Degenerative Vascular Smooth Muscle Cell
2
Descending Thin Limb Cell Type 1
2
Distal Convoluted Tubule Cell Type 1
2
Fibroblast
2
Glomerular Capillary Endothelial Cell
2
Intercalated Cell Type A
2
Intercalated Cell Type B
2
Lymphatic Endothelial Cell
2
M2 Macrophage
2
Medullary Thick Ascending Limb Cell
2
Mesangial Cell
2
Monocyte
2
Monocyte-derived Cell
2
Myofibroblast
2
Natural Killer T Cell
2
Natural Killer T Cell Type 1
2
Natural Killer T Cell Type 2
2
Non-Classical Monocyte
2
Parietal Epithelial Cell
2
Peritubular Capillary Endothelial Cell
2
Plasma Cell
2
Plasmacytoid Dendritic Cell
Organ
5
connective tissue
Life stage
2
adult
Date released
2
February, 2024
1
February, 2021
1
October, 2019
1
October, 2022
Software used
1
chromhmm
1
eigenmt
1
encode-ccres
1
macs
1
qTLtools
1
rasqual
Lab
3
Stephen Parker, UMich
2
AMP-T2D consortium
Project
5
AMP
RFA
3
AMP2
2
AMP
annotation_type!
gene expression
files.file_type!
bigWig
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR627LDJ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesenchymal stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR450DUL
released
Annotation file set
: Chromatin site QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR033HJN
released
Annotation file set
: Expression QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR847RRB
released
Annotation file set
: Cell type chromatin broad peaks and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR139NCZ
released
Annotation file set
: ChromHMM 15-state model for Mesenchymal Stem Cell from ENCODE ChIP-seq data.
Lab:
AMP-T2D consortium
Project:
AMP