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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
1
accessible chromatin
1
candidate regulatory elements
1
chromatin state
Annotation Category
3
Target gene links
3
cis-regulatory elements
Annotation type Category
4
DNase-seq
3
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
5
bed bed3+
1
bed bed9
File set status
6
released
Genome assembly (visualization)
6
hg19
1
GRCh38
Organism
6
Homo sapiens
Biosample type
5
in vitro differentiated cells
1
stem cell
Biosample term
113
monocyte
67
heart
63
stomach
62
HeLa-S3
57
A549
56
kidney
55
brain
50
lung
50
muscle of arm
47
adrenal gland
45
placenta
44
H1-hESC
44
muscle of leg
41
CD8-positive, alpha-beta T cell
41
large intestine
40
common myeloid progenitor, CD34-positive
39
left lung
39
liver
39
muscle of back
38
K562
37
neural progenitor cell
37
thymus
35
B cell
34
retina
34
right lung
32
right kidney
31
hematopoietic multipotent progenitor cell
31
islet of Langerhans
30
renal pelvis
29
fibroblast
29
renal cortex interstitium
28
endothelial cell
27
CD14-positive monocyte
27
CD4-positive, alpha-beta memory T cell
27
adipose tissue
27
left kidney
27
macrophage
26
heart left ventricle
26
spinal cord
23
T cell
23
spleen
22
pericyte cell
22
smooth muscle cell
21
CD8-positive, alpha-beta memory T cell
21
adipocyte
21
hepatocyte
20
pigmented layer of retina
20
tibial nerve
19
HFFc6
18
MCF-7
18
body of pancreas
18
caudate nucleus
18
coronary artery
18
trophoblast cell
17
mononuclear cell
17
pancreas
17
psoas muscle
17
regulatory T cell
17
sigmoid colon
16
right atrium auricular region
16
tibial artery
15
heart right ventricle
natural killer cell
15
ovary
15
thyroid gland
14
astrocyte
14
endothelial cell of umbilical vein
14
mesenchymal stem cell
14
pancreatic beta cell
14
pancreatic ductal cell
13
EndoC_BH1
13
GM12878
13
HepG2
13
T-helper 1 cell
13
ascending aorta
13
excitatory neuron
13
fibroblast of cardiac tissue
13
fibroblast of lung
13
gastrocnemius medialis
13
neutrophil
13
pancreatic acinar cell
13
subcutaneous adipose tissue
13
transverse colon
12
T-helper 17 cell
12
T-helper 2 cell
12
cerebellum
12
chorionic villus
12
embryonic stem cell
12
endocrine pancreas
12
endothelial cell of hepatic sinusoid
12
foreskin keratinocyte
12
frontal cortex
12
mammary gland epithelial cell
12
muscle of trunk
12
pancreatic delta cell
12
retinal pigment epithelial cell
11
erythroblast
11
fibroblast of dermis
11
keratinocyte
11
omental fat pad
11
putamen
11
substantia nigra
10
Ammon's horn
10
H9
10
Peyer's patch
10
aorta
10
chorion membrane
10
foreskin fibroblast
10
pancreatic alpha cell
10
skeletal muscle myoblast
10
skeletal muscle satellite cell
10
testis
9
cardiac muscle cell
9
colon epithelial cell
9
layer of hippocampus
9
skeletal muscle tissue
9
skin fibroblast
9
upper lobe of left lung
8
SK-N-SH
8
angular gyrus
8
breast epithelium
8
endometrium adenocarcinoma
8
esophagus muscularis mucosa
8
immortal human breast epithelial cell line cell
8
kidney tubule cell
8
left cardiac atrium
8
lymphocyte
8
naive T cell
8
pituitary stalk
8
thoracic aorta
8
trophoblast
7
CD4-positive, alpha-beta T cell
7
NAMALWA cell
7
SK-N-DZ
7
bronchial epithelial cell
7
choroid plexus epithelial cell
7
cingulate gyrus
7
esophagus
7
esophagus squamous epithelium
7
hepatic stellate cell
7
limb
7
lymphoblastoid cell line
7
osteoblast
6
22Rv1
6
Brodmann (1909) area 46
6
CD4-positive helper T cell
6
GM19240
6
IMR-90
6
KARPAS-422 cell
6
LNCaP clone FGC
6
SGBS preadipocytes
6
T47D
6
colonic mucosa
6
dermis blood vessel endothelial cell
6
dermis lymphatic vessel endothelial cell
6
epithelial cell of prostate
6
glomerular visceral epithelial cell
6
induced pluripotent stem cell
6
left renal cortex interstitium
6
left renal pelvis
6
mucosa of rectum
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
neurosphere
6
pancreatic stellate cell
6
right lobe of liver
6
right renal pelvis
6
temporal lobe
6
tongue
5
cardiac fibroblast
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
BE(2)-C
5
BJ cell
5
CD14-positive, CD16-negative classical monocyte
5
Caco-2 cell
5
GM06990
5
GM12864
5
GM12865
5
GM18507
5
GM19238
5
GM19239
5
H7-hESC
5
HAP-1
5
HCT116
5
HEK293
5
HL-60
5
HT-29
5
HUES8
5
LoVo cell
5
MM.1S
5
NT2-D1 cell
5
OCI-LY7
5
PC-9
5
SK-N-MC
5
WERI-Rb-1
5
alternatively activated macrophage
5
amygdala
Life stage
3
embryonic
Date released
February, 2021
3
September, 2022
1
June, 2020
1
March, 2020
1
May, 2021
Software used
2
r
1
abc
1
chromhmm
1
macs
1
nospecificsoft_customcode
Lab
5
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
6
AMP
RFA
6
AMP
annotation_type!
gene expression
biosample_term_name!
natural killer cell
month_released!
February, 2021
organ_slims!
small intestine
Showing 6 of 6 results
table-tab-icon
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP