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Schema
Citing CMDGA
Clear Filters
Annotation type
1
target gene predictions
Annotation Category
1
Target gene links
Annotation type Category
1
Capture-C
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
stem cell
Biosample term
115
monocyte
87
heart
85
stomach
74
kidney
72
brain
67
lung
67
muscle of arm
63
small intestine
61
adrenal gland
58
muscle of leg
56
large intestine
54
common myeloid progenitor, CD34-positive
54
muscle of back
52
left lung
48
CD8-positive, alpha-beta T cell
48
liver
45
right lung
42
B cell
42
hematopoietic multipotent progenitor cell
42
right kidney
40
neural progenitor cell
40
renal cortex interstitium
40
renal pelvis
39
retina
36
left kidney
34
islet of Langerhans
33
heart left ventricle
33
spleen
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
31
endothelial cell
31
fibroblast
31
spinal cord
29
adipose tissue
26
macrophage
25
adipocyte
24
hepatocyte
23
T cell
23
sigmoid colon
23
smooth muscle cell
23
tibial nerve
22
CD8-positive, alpha-beta memory T cell
22
body of pancreas
22
foreskin keratinocyte
22
pancreas
22
pericyte cell
21
caudate nucleus
21
natural killer cell
21
regulatory T cell
20
coronary artery
20
endothelial cell of umbilical vein
20
mononuclear cell
20
ovary
20
pigmented layer of retina
20
psoas muscle
18
gastrocnemius medialis
18
heart right ventricle
18
mesenchymal stem cell
18
thyroid gland
18
transverse colon
17
keratinocyte
17
muscle of trunk
17
pancreatic ductal cell
17
right atrium auricular region
17
tibial artery
16
T-helper 1 cell
16
astrocyte
16
fibroblast of lung
16
foreskin fibroblast
16
layer of hippocampus
16
mammary gland epithelial cell
16
omental fat pad
16
retinal pigment epithelial cell
16
subcutaneous adipose tissue
16
substantia nigra
16
testis
16
upper lobe of left lung
15
CD4-positive, alpha-beta T cell
15
ascending aorta
15
endocrine pancreas
15
neutrophil
15
osteoblast
15
pancreatic beta cell
15
skeletal muscle myoblast
15
skeletal muscle tissue
14
Peyer's patch
14
T-helper 17 cell
14
T-helper 2 cell
14
cardiac muscle cell
14
cerebellum
14
embryonic stem cell
14
frontal cortex
14
pancreatic acinar cell
14
prostate gland
14
putamen
13
excitatory neuron
13
mammary epithelial cell
13
neurosphere
13
pancreatic alpha cell
12
aorta
12
bronchial epithelial cell
12
endothelial cell of hepatic sinusoid
12
fibroblast of cardiac tissue
12
fibroblast of dermis
12
left renal cortex interstitium
12
left renal pelvis
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
pancreatic delta cell
11
Ammon's horn
11
breast epithelium
11
erythroblast
11
esophagus muscularis mucosa
11
esophagus squamous epithelium
11
left cardiac atrium
11
right renal pelvis
11
skeletal muscle satellite cell
11
temporal lobe
10
angular gyrus
10
colonic mucosa
10
dermis blood vessel endothelial cell
10
esophagus
10
lower leg skin
10
neuronal stem cell
10
right renal cortex interstitium
10
thoracic aorta
10
trophoblast
9
cingulate gyrus
9
duodenal mucosa
9
epithelial cell of prostate
9
eye
9
foreskin melanocyte
9
kidney tubule cell
9
mesendoderm
9
naive T cell
9
parathyroid adenoma
9
skin fibroblast
9
tongue
8
T-cell acute lymphoblastic leukemia
8
endodermal cell
8
fibroblast of breast
8
fibroblast of mammary gland
8
fibroblast of pulmonary artery
8
globus pallidus
8
glutamatergic neuron
8
hepatic stellate cell
8
limb
8
mature neutrophil
8
midbrain
8
mucosa of rectum
8
muscle layer of duodenum
8
myoepithelial cell of mammary gland
8
vagina
7
CD1c-positive myeloid dendritic cell
7
CD4-positive helper T cell
7
choroid plexus epithelial cell
7
epithelial cell of proximal tubule
7
gastroesophageal sphincter
7
glomerular endothelial cell
7
kidney glomerular epithelial cell
7
luminal epithelial cell of mammary gland
7
mesodermal cell
7
muscle layer of colon
7
neuroblastoma cell line
7
pancreatic stellate cell
7
right lobe of liver
7
stomach smooth muscle
7
uterus
6
Brodmann (1909) area 46
6
T-cell
6
amygdala
6
astrocyte of the cerebellum
6
astrocyte of the hippocampus
6
bipolar neuron
6
colon epithelial cell
6
cortical cell of adrenal gland
6
dendritic cell
6
dermis lymphatic vessel endothelial cell
6
enterocyte
6
epithelial cell of esophagus
6
glomerular visceral epithelial cell
6
hypothalamus
6
kidney epithelial cell
6
medulla oblongata
6
memory B cell
6
middle frontal gyrus
6
muscle cell
6
neural cell
6
nucleus accumbens
6
occipital lobe
6
superior temporal gyrus
6
urinary bladder
5
cardiac fibroblast
5
CD14-positive, CD16-negative classical monocyte
5
SGBS preadipocytes
5
Th1 cell
5
alternatively activated macrophage
5
anterior cingulate cortex
5
basal cell
5
brain microvascular endothelial cell
5
cartilage tissue
Organ
1
brain
Date released
1
September, 2023
Software used
1
chicago
Lab
1
Struan F.A. Grant, CHOP
Project
1
AMP
RFA
1
AMP2
annotation_type!
gene expression
biosample_type!
cell line
organ_slims!
extraembryonic component
thymus
Showing 1 of 1 results
table-tab-icon
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Download
FileSet
DSR843RXV
released
Annotation file set
: Target gene annotation of open chromatin regions from promoter capture c of ESC (1frag and 4 frag)
Lab:
Struan F.A. Grant, CHOP
Project:
AMP