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Citing CMDGA
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Annotation type
1
target gene predictions
Annotation Category
1
Target gene links
Annotation type Category
1
Capture-C
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
stem cell
Biosample term
114
monocyte
83
heart
82
stomach
71
kidney
69
brain
67
lung
66
muscle of arm
64
HeLa-S3
62
small intestine
61
A549
60
adrenal gland
59
placenta
56
muscle of leg
55
large intestine
54
common myeloid progenitor, CD34-positive
54
muscle of back
52
left lung
47
CD8-positive, alpha-beta T cell
47
liver
47
thymus
45
H1-hESC
44
neural progenitor cell
44
right lung
42
right kidney
41
hematopoietic multipotent progenitor cell
40
K562
39
B cell
39
renal cortex interstitium
38
renal pelvis
37
retina
36
left kidney
33
spinal cord
32
CD4-positive, alpha-beta memory T cell
32
fibroblast
32
islet of Langerhans
32
spleen
31
CD14-positive monocyte
31
endothelial cell
31
heart left ventricle
28
adipose tissue
27
macrophage
25
MCF-7
23
adipocyte
23
smooth muscle cell
22
CD8-positive, alpha-beta memory T cell
22
body of pancreas
22
hepatocyte
22
sigmoid colon
22
trophoblast cell
21
foreskin keratinocyte
21
keratinocyte
21
pericyte cell
21
tibial nerve
20
T cell
20
breast cancer cell
20
mononuclear cell
20
pigmented layer of retina
19
caudate nucleus
19
psoas muscle
19
regulatory T cell
18
HFFc6
18
coronary artery
18
foreskin fibroblast
18
natural killer cell
18
ovary
18
pancreas
18
pancreatic ductal cell
17
embryonic stem cell
17
mesenchymal stem cell
17
muscle of trunk
17
thyroid gland
17
transverse colon
16
chorionic villus
16
endothelial cell of umbilical vein
16
fibroblast of lung
16
gastrocnemius medialis
16
heart right ventricle
16
layer of hippocampus
16
substantia nigra
15
CD4-positive, alpha-beta T cell
15
EndoC_BH1
15
GM12878
15
H9
15
HepG2
15
astrocyte
15
fibroblast of cardiac tissue
15
neutrophil
15
omental fat pad
15
pancreatic beta cell
15
right atrium auricular region
15
skeletal muscle tissue
15
testis
15
tibial artery
15
upper lobe of left lung
14
T-helper 1 cell
14
T-helper 17 cell
14
T-helper 2 cell
14
cardiac muscle cell
14
endocrine pancreas
14
mammary gland epithelial cell
14
skeletal muscle myoblast
14
subcutaneous adipose tissue
13
ascending aorta
13
cerebellum
13
neurosphere
13
pancreatic acinar cell
13
pancreatic alpha cell
13
prostate gland
13
retinal pigment epithelial cell
12
Peyer's patch
12
bronchial epithelial cell
12
excitatory neuron
12
fibroblast of dermis
12
left renal cortex interstitium
12
neuroblastoma cell
12
osteoblast
12
pancreatic delta cell
12
putamen
11
endothelial cell of hepatic sinusoid
11
erythroblast
11
lymphoblastoid cell line
11
mammary epithelial cell
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
skeletal muscle satellite cell
11
temporal lobe
10
22Rv1
10
aorta
10
epithelial cell of prostate
10
frontal cortex
10
gastric cancer cell
10
lymphocyte
10
right renal cortex interstitium
10
thoracic aorta
9
Ammon's horn
9
Rhabdomyosarcoma
9
SK-N-SH
9
breast epithelium
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
esophagus
9
esophagus squamous epithelium
9
left cardiac atrium
9
left renal pelvis
9
liposarcoma
9
neuronal stem cell
9
parathyroid adenoma
9
right renal pelvis
9
trophoblast
8
B-lymphoblastoid cell line
8
cingulate gyrus
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
endodermal cell
8
esophagus muscularis mucosa
8
fibroblast cell line
8
immortal human breast epithelial cell line cell
8
lower leg skin
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
tongue
8
vagina
7
GM12865
7
HEK293
7
IMR-90
7
NAMALWA cell
7
SK-N-DZ
7
SK-N-MC
7
T47D
7
angular gyrus
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
eye
7
foreskin melanocyte
7
limb
7
mature neutrophil
7
mesendoderm
7
right lobe of liver
7
skin fibroblast
7
stomach smooth muscle
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
Brodmann (1909) area 46
6
CD1c-positive myeloid dendritic cell
6
CD4-positive helper T cell
6
CMK
6
Caco-2 cell
6
Chondroid Chordoma
6
GM06990
6
GM12864
6
HAP-1
6
HCT116
6
HT-29
Organ
1
brain
Date released
1
September, 2023
Software used
1
chicago
Lab
1
Struan F.A. Grant, CHOP
Project
1
AMP
RFA
1
AMP2
annotation_type!
gene expression
month_released!
April, 2020
January, 2020
June, 2020
Showing 1 of 1 results
table-tab-icon
matrix-icon
Download
FileSet
DSR843RXV
released
Annotation file set
: Target gene annotation of open chromatin regions from promoter capture c of ESC (1frag and 4 frag)
Lab:
Struan F.A. Grant, CHOP
Project:
AMP