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Annotation type
6
caQTL
1
eQTL
Annotation Category
7
Genetic variant effects
Annotation type Category
5
snATAC-seq
1
ATAC-seq
1
RNA microarray
Available data
6
bed bed3+
File set status
7
released
Genome assembly (visualization)
7
hg19
Organism
7
Homo sapiens
Biosample type
5
primary cell
2
tissue
Biosample term
2
liver
1
endothelial cell
1
mesenchymal stem cell
1
smooth muscle cell
1
type I muscle cell
1
type II muscle cell
Organ
2
liver
2
musculature of body
1
connective tissue
1
epithelium
Life stage
1
adult
Date released
5
October, 2022
1
August, 2021
1
May, 2022
Software used
2492
macs
1711
r
1030
chromhmm
837
encode-ccres
250
abc
117
deseq2
111
qTLtools
80
deltasvm
32
cicero
27
chicago
27
nospecificsoft_customcode
24
gtex_eqtl:V8
24
gtex_finemapping_eQTL:caveman
24
gtex_finemapping_eQTL:caviar
24
gtex_finemapping_eQTL:dapg
15
limix
14
hiccups
12
matrix-eQTL
11
rasqual
8
fastqtl
6
eigenmt
6
samtools
5
peer
5
unknown
3
mach2qtl
3
minfi
3
sqtlseeker
2
combined S2G strategy
2
emmax
2
mpraflow
1
altius-index
1
betacells_cytokines_t1d
1
bimbam
1
cisgenome
1
e-range
1
epacts
1
fast-lmm
1
haploview
1
probabel
1
snap
1
spp
Lab
5
Stephen Parker, UMich
1
AMP-T2D consortium
1
Karen Mohlke, UNC
Project
7
AMP
RFA
5
AMP2
2
AMP
annotation_type!
gene expression
month_released!
February, 2024
Showing 7 of 7 results
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Download
FileSet
DSR797VBE
released
Annotation file set
: caQTL annotation of liver tissue from pilot study(AJHG2021) in Mohlke Lab
Lab:
Karen Mohlke, UNC
Project:
AMP
FileSet
DSR970CNB
released
Annotation file set
: eQTL annotation of human liver from PMID:22006096(NCBI GEO accession: GSE32504, GSE39036)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR273WHL
released
Annotation file set
: Chromatin site QTLs of type II muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR085VQO
released
Annotation file set
: Chromatin site QTLs of type I muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR375CST
released
Annotation file set
: Chromatin site QTLs of smooth muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR450DUL
released
Annotation file set
: Chromatin site QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR259FVK
released
Annotation file set
: Chromatin site QTLs of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP