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Getting started
Schema
Clear Filters
Annotation type
2638
pQTL
1709
candidate regulatory elements
1357
target gene predictions
977
histone modifications
944
chromatin state
925
accessible chromatin
817
binding sites
gene expression
484
differential activity
180
eQTL
141
variant allelic effects
74
Fine-mapped variants
25
caQTL
7
sQTL
5
hQTL
4
variant to gene
3
meQTL
3
other
1
representative DNase hypersensitivity sites
Annotation Category
5373
cis-regulatory elements
3078
Genetic variant effects
1357
Target gene links
484
Gene expression levels
2
Others
Annotation type Category
5248
ChIP-seq
3064
DNase-seq
2638
quantitative proteomics
515
ATAC-seq
460
snATAC-seq
259
RNA-seq
189
HiC
139
H3K27ac ChIP-Seq
110
single cell RNA-seq
47
pCHi-C
42
scRNA-seq
17
Expression arrays
11
snRNA-seq
5
Capture-C
4
RNA microarray
3
DNA methylation profiling by array assay
1
SNP-SELEX
Available data
6084
bed bed3+
2911
tsv
869
bed bed9
537
bigWig
40
bigBed bed9
34
bed bed9+
16
bigBed narrowPeak
12
bed bed3
12
bed narrowPeak
4
bam
3
bed gappedPeak
3
xls
2
csv
2
txt
File set status
10292
released
1
archived
1
revoked
Genome assembly (visualization)
6990
hg19
1912
GRCh38
4
hg18
Organism
10246
Homo sapiens
Biosample type
5175
tissue
2386
primary cell
2331
cell line
396
in vitro differentiated cells
4
stem cell
Biosample term
2635
whole blood
120
monocyte
88
heart
85
stomach
74
kidney
72
brain
67
lung
67
muscle of arm
64
HeLa-S3
63
small intestine
62
A549
62
endothelial cell
61
adrenal gland
60
placenta
58
B cell
58
muscle of leg
56
large intestine
54
common myeloid progenitor, CD34-positive
54
muscle of back
53
macrophage
52
left lung
48
CD8-positive, alpha-beta T cell
48
thymus
47
liver
46
H1-hESC
45
T cell
45
fibroblast
45
right lung
45
smooth muscle cell
44
neural progenitor cell
43
adipocyte
42
hematopoietic multipotent progenitor cell
42
natural killer cell
42
right kidney
41
K562
40
renal cortex interstitium
40
renal pelvis
39
retina
36
left kidney
35
cardiac muscle cell
35
spinal cord
34
islet of Langerhans
33
heart left ventricle
33
spleen
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
29
adipose tissue
29
hepatocyte
26
MCF-7
25
pancreatic ductal cell
24
pericyte cell
23
neuron
23
sigmoid colon
23
tibial nerve
23
trophoblast cell
22
CD8-positive, alpha-beta memory T cell
22
body of pancreas
22
foreskin keratinocyte
22
pancreas
21
caudate nucleus
21
dendritic cell
21
keratinocyte
21
regulatory T cell
20
breast cancer cell
20
mononuclear cell
20
pigmented layer of retina
20
psoas muscle
19
coronary artery
19
endothelial cell of lymphatic vessel
19
endothelial cell of umbilical vein
19
foreskin fibroblast
19
ovary
18
HFFc6
18
gastrocnemius medialis
18
heart right ventricle
18
mesenchymal stem cell
18
pericyte
18
thyroid gland
18
transverse colon
17
HepG2
17
astrocyte
17
embryonic stem cell
17
mast cell
17
muscle of trunk
17
right atrium auricular region
17
tibial artery
16
chorionic villus
16
fibroblast of cardiac tissue
16
fibroblast of lung
16
layer of hippocampus
16
retinal pigment epithelial cell
16
substantia nigra
16
testis
16
upper lobe of left lung
15
CD4-positive, alpha-beta T cell
15
EndoC_BH1
15
GM12878
15
T-helper 1 cell
15
endocardial cell
15
hepatic stellate cell
15
mammary gland epithelial cell
15
neutrophil
15
omental fat pad
15
pancreatic beta cell
15
skeletal muscle myoblast
15
skeletal muscle tissue
15
subcutaneous adipose tissue
14
H9
14
T-helper 17 cell
14
T-helper 2 cell
14
ascending aorta
14
endocrine pancreas
14
osteoblast
14
prostate gland
14
putamen
14
skeletal muscle satellite cell
13
Peyer's patch
13
bronchial epithelial cell
13
cerebellum
13
neurosphere
13
pancreatic acinar cell
13
pancreatic alpha cell
12
aorta
12
excitatory neuron
12
fibroblast of dermis
12
frontal cortex
12
left renal cortex interstitium
12
lymphoblastoid cell line
12
mammary epithelial cell
12
neuroblastoma cell
12
neuronal stem cell
12
pancreatic delta cell
11
Ammon's horn
11
breast epithelium
11
endothelial cell of hepatic sinusoid
11
epithelial cell of prostate
11
erythroblast
11
left renal pelvis
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
right renal pelvis
11
temporal lobe
10
22Rv1
10
Rhabdomyosarcoma
10
choroid plexus epithelial cell
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
gastric cancer cell
10
left cardiac atrium
10
lymphocyte
10
right renal cortex interstitium
10
skin fibroblast
10
thoracic aorta
10
trophoblast
10
type B pancreatic cell
9
SK-N-DZ
9
SK-N-SH
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
esophagus
9
kidney tubule cell
9
liposarcoma
9
pancreatic A cell
9
parathyroid adenoma
9
tongue
8
B-lymphoblastoid cell line
8
GM12865
8
HEK293
8
IMR-90
8
NAMALWA cell
8
cingulate gyrus
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
endodermal cell
8
fibroblast cell line
8
globus pallidus
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
mesendoderm
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
vagina
7
AG04449 cell
7
AG04450 cell
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
BE(2)-C
7
BJ cell
7
GM06990
7
GM12864
7
HT-29
7
SK-N-MC
7
T47D
7
WERI-Rb-1
7
angular gyrus
7
chorion membrane
7
dermis lymphatic vessel endothelial cell
Organ
2868
vasculature
2852
bodily fluid
2841
blood
2822
blood vessel
2657
vein
708
epithelium
472
connective tissue
467
kidney
466
brain
375
musculature of body
349
heart
310
lung
286
intestine
253
pancreas
239
limb
205
embryo
202
skin of body
172
large intestine
163
liver
146
extraembryonic component
125
adipose tissue
117
stomach
108
eye
87
mammary gland
85
bone element
84
small intestine
81
uterus
77
prostate gland
75
artery
73
placenta
72
adrenal gland
64
penis
64
ureter
62
lymph node
60
__MARKER__
49
thymus
48
gonad
43
esophagus
42
spinal cord
33
spleen
25
testis
23
lymphoid tissue
23
nerve
22
ovary
22
thyroid gland
21
lymphatic vessel
18
mouth
18
skeleton
16
bronchus
13
bone marrow
12
breast
12
pituitary gland
9
tongue
9
urinary bladder
9
vagina
5
trachea
4
nose
Life stage
4628
adult
1374
embryonic
430
unknown
114
child
75
newborn
32
young adult
30
postnatal
29
fetal
Date released
2636
February, 2025
2511
September, 2022
2413
February, 2021
333
November, 2021
320
May, 2026
299
February, 2024
299
May, 2021
289
June, 2020
155
May, 2020
117
March, 2020
115
September, 2023
106
January, 2022
101
October, 2022
79
August, 2021
72
January, 2020
57
March, 2023
56
January, 2021
49
May, 2022
44
November, 2022
40
May, 2024
35
August, 2017
33
July, 2025
32
February, 2023
26
February, 2020
19
April, 2020
14
November, 2019
14
October, 2019
9
May, 2019
8
April, 2019
3
September, 2018
2
January, 2025
2
March, 2026
2
November, 2020
1
August, 2020
1
August, 2022
1
June, 2021
Software used
2558
macs
1712
r
1035
chromhmm
838
encode-ccres
250
abc
139
qTLtools
136
deltasvm
117
deseq2
34
cicero
27
chicago
27
nospecificsoft_customcode
24
gtex_eqtl:V8
24
gtex_finemapping_eQTL:caveman
24
gtex_finemapping_eQTL:caviar
24
gtex_finemapping_eQTL:dapg
15
limix
14
hiccups
14
matrix-eQTL
11
rasqual
8
fastqtl
6
eigenmt
6
samtools
5
peer
5
unknown
3
mach2qtl
3
minfi
3
sqtlseeker
2
combined S2G strategy
2
emmax
2
mpraflow
1
altius-index
1
bedops
1
betacells_cytokines_t1d
1
bimbam
1
cisgenome
1
e-range
1
epacts
1
fast-lmm
1
haploview
1
pepatac
1
probabel
1
snap
1
spp
Encyclopedia version
1
Adipocyte.narrowpeak.bed.gz Adipocyte.consensus_summit_features.bed.gz
1
Endothelial.narrowpeak.bed.gz Endothelial.consensus_summit_features.bed.gz
1
FAP.narrowpeak.bed.gz Mesenchymal_Stem_Cell.consensus_summit_features.bed.gz
1
Macrophage.narrowpeak.bed.gz Macrophage.consensus_summit_features.bed.gz
1
Neuromuscular_junction.narrowpeak.bed.gz Neuromuscular_junction.consensus_summit_features.bed.gz
1
Neuronal.narrowpeak.bed.gz Neuronal.consensus_summit_features.bed.gz
1
Satellite_Cell.narrowpeak.bed.gz Satellite_Cell.consensus_summit_features.bed.gz
1
Smooth_Muscle.narrowpeak.bed.gz Smooth_Muscle.consensus_summit_features.bed.gz
1
T_cell.narrowpeak.bed.gz T_cell.consensus_summit_features.bed.gz
1
Type_1.narrowpeak.bed.gz Type_1.consensus_summit_features.bed.gz
1
Type_2a.narrowpeak.bed.gz Type_2a.consensus_summit_features.bed.gz
1
Type_2x.narrowpeak.bed.gz Type_2x.consensus_summit_features.bed.gz
Lab
8983
AMP-T2D consortium
489
Kyle Gaulton, UCSD
393
Bing Ren, UCSD
139
Jesse Engreitz, Stanford University
110
KPMP
86
Stephen Parker, UMich
21
Katalin Susztak, Upenn
19
Xin Sun, UCSD
15
Ines Cebola, Imperial College London
9
Anna Gloyn, Oxford
8
Struan F.A. Grant, CHOP
5
ITG
5
Patrick T. Ellinor, Broad
4
Doug Phanstiel, UNC
3
Karen Mohlke, UNC
3
Stephen S. Rich Lab @UVA
2
Joseph Wu, Stanford
Project
9752
AMP
333
ENCODE
110
KPMP
60
T1D
19
LungMap
15
community
5
ITG
Collection Tags
2635
UK_Biobank
2499
EpiMap
1848
ChIP-Atlas
938
ENCODE
429
DGA
424
AMP
406
T2DKP
327
T1D
320
pyxis
181
BLUEPRINT
174
4DN
130
T2DKP
111
T2D
110
KPMP
101
eQTLCatalogue
100
CMDGA
96
GTEx
54
HPAP