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Annotation type
1
variant allelic effects
Annotation Category
1
Genetic variant effects
Annotation type Category
1
snATAC-seq
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
primary cell
Biosample term
54
common myeloid progenitor, CD34-positive
42
monocyte
37
B cell
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
27
hepatocyte
27
regulatory T cell
23
T-helper 1 cell
23
epithelial cell of proximal tubule
22
CD8-positive, alpha-beta memory T cell
22
endothelial cell
21
T-helper 17 cell
21
glomerular endothelial cell
20
endothelial cell of umbilical vein
20
mononuclear cell
20
natural killer cell
19
foreskin keratinocyte
18
CD8-positive, alpha-beta T cell
18
T cell
18
macrophage
17
T-helper 2 cell
17
trophoblast cell
16
fibroblast of lung
16
pancreatic beta cell
15
osteoblast
15
pancreatic alpha cell
15
skeletal muscle myoblast
14
endothelial cell of hepatic sinusoid
14
foreskin fibroblast
14
pancreatic delta cell
14
pancreatic ductal cell
13
CD4-positive, alpha-beta T cell
13
naive thymus-derived CD4-positive, alpha-beta T cell
13
neurosphere
13
neutrophil
12
fibroblast of dermis
12
pancreatic acinar cell
11
bronchial epithelial cell
11
fibroblast
11
glomerular visceral epithelial cell
11
keratinocyte
11
mammary gland epithelial cell
10
dermis blood vessel endothelial cell
10
kidney tubule cell
10
mammary epithelial cell
9
epithelial cell of prostate
9
fibroblast of cardiac tissue
9
naive T cell
9
naive thymus-derived CD8-positive, alpha-beta T cell
9
skeletal muscle satellite cell
8
fibroblast of breast
8
kidney glomerular epithelial cell
8
mature neutrophil
8
myoepithelial cell of mammary gland
8
pancreatic stellate cell
8
renal cortical epithelial cell
8
retinal pigment epithelial cell
8
smooth muscle cell
7
astrocyte
7
cardiac muscle cell
7
choroid plexus epithelial cell
7
fibroblast of mammary gland
7
fibroblast of pulmonary artery
7
fibroblast of villous mesenchyme
7
hepatic stellate cell
7
kidney epithelial cell
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
memory B cell
7
mesenchymal stem cell
7
skin fibroblast
6
CD1c-positive myeloid dendritic cell
6
T-cell
6
alternatively activated macrophage
6
astrocyte of the cerebellum
6
astrocyte of the hippocampus
6
dermis lymphatic vessel endothelial cell
6
epithelial cell of esophagus
6
erythroblast
6
foreskin melanocyte
6
gamma-delta T cell
6
naive B cell
6
olfactory receptor cell
6
pancreatic polypeptide-secreting cell
6
pulmonary artery endothelial cell
6
skeletal muscle cell
6
skeletal muscle fiber
6
smooth muscle cell of the brain vasculature
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
T follicular helper cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
brain microvascular endothelial cell
5
central memory CD8-positive, alpha-beta T cell
5
effector memory CD8-positive, alpha-beta T cell
5
fibroblast of peridontal ligament
5
fibroblast of the aortic adventitia
5
inflammatory macrophage
5
iris pigment epithelial cell
5
kidney capillary endothelial cell
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
lung microvascular endothelial cell
5
mesangial cell
5
myofibroblast cell
5
non-pigmented ciliary epithelial cell
5
pancreatic endothelial cell
5
peripheral blood mononuclear cell
5
type I muscle cell
5
type II muscle cell
4
activated CD4-positive, alpha-beta T cell
4
adult endothelial progenitor cell
4
astrocyte of the spinal cord
4
cardiac fibroblast
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
fibroblast of gingiva
4
fibroblast of the conjunctiva
4
glutamatergic neuron
4
kidney connecting tubule epithelial cell
4
leukocyte
4
mature natural killer cell
4
memory T cell
4
memory regulatory T cell
4
nephron progenitor
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
pericyte cell
4
stromal cell of bone marrow
4
vascular associated smooth muscle cell
3
Cycling Mononuclear Phagocyte
3
Mast Cell
3
S-shaped body
3
Schwann cell
3
activated CD8-positive, alpha-beta T cell
3
adipocyte
3
amnion mesenchymal stem cell
3
amniotic stem cell
3
aortic adventitial fibroblast
3
aortic endothelial cell
Organ
1
epithelium
1
stomach
Date released
1
February, 2024
Software used
1
deltasvm
Lab
1
Bing Ren, UCSD
Project
ENCODE
1
AMP
RFA
1
AMP
annotation_type!
hQTL
histone modifications
award.project!
ENCODE
Showing 1 of 1 results
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Download
FileSet
DSR552HSG
released
Annotation file set
: Variant allelic effects annotation of Gastric chief cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP