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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
variant allelic effects
1
chromatin state
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
4
ChIP-seq
3
DNase-seq
Available data
3
bed bed3+
1
bed bed9
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
39
endothelial cell
35
hepatocyte
24
pancreatic ductal cell
22
epithelial cell of proximal tubule
22
foreskin keratinocyte
20
EndoC_BH1
20
glomerular endothelial cell
20
keratinocyte
20
pigmented layer of retina
19
endothelial cell of umbilical vein
17
pancreatic acinar cell
17
pancreatic beta cell
16
endothelial cell of hepatic sinusoid
16
pancreatic alpha cell
16
retinal pigment epithelial cell
15
mammary gland epithelial cell
15
pancreatic delta cell
12
bronchial epithelial cell
12
epithelial cell of prostate
12
glomerular visceral epithelial cell
11
breast epithelium
11
esophagus squamous epithelium
10
dermis blood vessel endothelial cell
10
kidney tubule cell
10
mammary epithelial cell
9
choroid plexus epithelial cell
9
colon epithelial cell
8
dermis lymphatic vessel endothelial cell
8
myoepithelial cell of mammary gland
7
kidney glomerular epithelial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
luminal epithelial cell of mammary gland
7
pulmonary artery endothelial cell
7
renal cortical epithelial cell
6
kidney epithelial cell
6
type II pneumocyte
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
Connecting Tubule Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
Medullary Thick Ascending Limb Cell
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Transitional Principal-Intercalated Cell
5
brain microvascular endothelial cell
5
cortical cell of adrenal gland
5
iris pigment epithelial cell
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
lung microvascular endothelial cell
5
non-pigmented ciliary epithelial cell
5
pancreatic endothelial cell
5
pancreatic polypeptide-secreting cell
5
tracheal epithelial cell
4
aortic endothelial cell
4
dermis microvascular lymphatic vessel endothelial cell
4
endothelial cell of lymphatic vessel
4
epithelial cell of esophagus
4
kidney capillary endothelial cell
4
kidney connecting tubule epithelial cell
4
pancreatic A cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
type B pancreatic cell
4
type I pneumocyte
3
S-shaped body
3
club cell
3
endocardial cell
3
enterocyte
3
epidermal melanocyte
3
epithelial cell of amnion
3
hepatocyte(AFP)
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
meso-epithelial cell
3
mesothelial cell
2
basal cell of epidermis
2
capillary endothelial cell
2
cardiac endothelial cell
2
cholangiocyte
2
eccrine cell
2
endothelial cell of coronary artery
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
foveolar cell of stomach
2
granular cell of epidermis
2
kidney epithelium
2
kidney inner medulla collecting duct intercalated cell
2
myoepithelial cell
2
non keratinizing barrier epithelial cell
2
paneth cell
2
parietal cell
2
peptic cell
2
renal connecting tubule
2
renal principal cell
2
renal vesicle
2
respiratory goblet cell
2
small intestine goblet cell
2
stomach neuroendocrine cell
2
thyroid follicular cell
2
type I cell of adrenal cortex
2
type II cell of adrenal cortex
2
ureteric bud
2
vein endothelial cell
1
amniotic epithelial cell
1
breast - mammary tissue
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
corneal epithelium
1
enteroendocrine cell
1
epithelial cell of distal tubule
1
esophagus - mucosa
1
gastric goblet cell
1
glomerular epithelium
1
goblet cell
1
intermediate endothelial cell
1
intestinal epithelial cell
1
intestinal epithelium
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
lung neuroendocrine cell
1
nephron tubule
1
neuroendocrine cell
1
pancreatic D cell
1
pancreatic PP cell
1
parietal epithelial cell
1
placental villus capillary endothelial cell
1
proximal tubule
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal cortex tubule
1
renal glomerulus
1
renal intercalated cell
1
urothelial cell
Organ
4
epithelium
4
esophagus
Life stage
4
unknown
Date released
3
September, 2022
1
February, 2021
Software used
2
r
1
chromhmm
1
encode-ccres
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
annotation_type!
hQTL
variant allelic effects
Showing 4 of 4 results
table-tab-icon
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Download
FileSet
DSR436AEJ
released
Annotation file set
: Candidate regulatory elements for BSS00307 epithelial cell of esophagus from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR005XGT
released
Annotation file set
: Target gene predictions for BSS00307 epithelial cell of esophagus from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR929IPZ
released
Annotation file set
: Chromatin states for BSS00307 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR685PAG
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE epithelial cell of esophagus
Lab:
AMP-T2D consortium
Project:
AMP