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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
target gene predictions
1
accessible chromatin
1
binding sites
1
histone modifications
Annotation Category
5
cis-regulatory elements
2
Target gene links
Annotation type Category
5
ChIP-seq
5
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
7
bed bed3+
bed bed9
File set status
7
released
Genome assembly (visualization)
7
hg19
Organism
7
Homo sapiens
Biosample type
7
cell line
Biosample term
129
monocyte
68
heart
67
stomach
65
kidney
55
brain
52
lung
51
CD8-positive, alpha-beta T cell
51
muscle of arm
48
adrenal gland
48
small intestine
47
neural progenitor cell
46
placenta
45
islet of Langerhans
44
A549
43
large intestine
43
muscle of leg
41
common myeloid progenitor, CD34-positive
41
endothelial cell
41
liver
41
muscle of back
39
left lung
37
retina
37
thymus
36
B cell
35
hepatocyte
34
right lung
33
hematopoietic multipotent progenitor cell
32
fibroblast
32
macrophage
32
right kidney
31
renal cortex interstitium
31
renal pelvis
28
spinal cord
28
spleen
27
CD14-positive monocyte
27
left kidney
25
adipose tissue
25
heart left ventricle
25
pancreatic ductal cell
25
regulatory T cell
24
adipocyte
24
smooth muscle cell
23
CD4-positive, alpha-beta memory T cell
22
EndoC_BH1
22
epithelial cell of proximal tubule
21
MCF-7
21
pericyte cell
21
subcutaneous adipose tissue
21
tibial nerve
20
body of pancreas
20
breast cancer cell
20
glomerular endothelial cell
20
natural killer cell
20
pigmented layer of retina
19
K562
19
T-helper 1 cell
19
caudate nucleus
19
keratinocyte
18
T cell
18
T-helper 17 cell
18
foreskin keratinocyte
18
pancreas
18
pancreatic beta cell
17
coronary artery
17
foreskin fibroblast
17
ovary
17
pancreatic acinar cell
17
pancreatic alpha cell
17
right atrium auricular region
17
sigmoid colon
17
trophoblast cell
16
H1-hESC
16
HepG2
16
astrocyte
16
cardiac muscle cell
16
endothelial cell of hepatic sinusoid
16
induced pluripotent stem cell
16
osteoblast
16
substantia nigra
15
CD4-positive, alpha-beta T cell
15
CD8-positive, alpha-beta memory T cell
15
mesenchymal stem cell
15
omental fat pad
15
pancreatic delta cell
15
retinal pigment epithelial cell
15
transverse colon
14
endothelial cell of umbilical vein
14
gastrocnemius medialis
14
mononuclear cell
14
psoas muscle
14
testis
14
thyroid gland
14
tibial artery
13
T-helper 2 cell
13
excitatory neuron
13
fibroblast of cardiac tissue
13
frontal cortex
13
layer of hippocampus
13
putamen
13
skeletal muscle myoblast
13
skeletal muscle tissue
13
upper lobe of left lung
12
ascending aorta
12
cerebellum
12
embryonic stem cell
12
fibroblast of lung
12
heart right ventricle
12
lymphoblastoid cell line
12
mammary epithelial cell
12
muscle of trunk
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
neuroblastoma cell
12
prostate gland
11
Ammon's horn
11
chorionic villus
11
erythroblast
11
mammary gland epithelial cell
11
neutrophil
10
HeLa-S3
10
Peyer's patch
10
Rhabdomyosarcoma
10
bronchial epithelial cell
10
endocrine pancreas
10
gastric cancer cell
10
glomerular visceral epithelial cell
10
left renal cortex interstitium
10
neuronal stem cell
10
pancreatic stellate cell
10
progenitor cell of endocrine pancreas
10
right renal pelvis
10
skeletal muscle satellite cell
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
epithelial cell of prostate
9
fibroblast of dermis
9
left cardiac atrium
9
left renal pelvis
9
liposarcoma
9
neurosphere
9
skin fibroblast
8
22Rv1
8
B-lymphoblastoid cell line
8
GM12878
8
aorta
8
breast epithelium
8
choroid plexus epithelial cell
8
esophagus
8
fibroblast cell line
8
hepatic stellate cell
8
pituitary stalk
8
skeletal muscle fiber
8
temporal lobe
8
trophoblast
7
CD4-positive helper T cell
7
GM12865
7
H9
7
HEK293
7
amygdala
7
colonic mucosa
7
esophageal adenocarcinoma
7
esophagus muscularis mucosa
7
esophagus squamous epithelium
7
extended pluripotent stem (EPS) cells
7
kidney tubule cell
7
lower leg skin
7
mature neutrophil
7
memory B cell
7
mesendoderm
7
thoracic aorta
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
CD1c-positive myeloid dendritic cell
6
Chondroid Chordoma
6
GM06990
6
HAP-1
6
HT-29
6
IMR-90
6
Jurkat
6
LNCAP
6
NAMALWA cell
6
SK-N-MC
6
anterior cingulate cortex
6
chondrocyte
6
cingulate gyrus
6
colon epithelial cell
6
endometrium adenocarcinoma
6
eye
6
fibroblast of pulmonary artery
6
globus pallidus
6
hESC cell
6
hypothalamus
6
immortal human breast epithelial cell line cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neuroblastoma cell line
6
nucleus accumbens
Organ
7
blood
7
bodily fluid
Life stage
3
adult
Date released
3
February, 2021
2
September, 2022
1
June, 2020
1
May, 2021
Software used
3
macs
2
r
1
abc
1
encode-ccres
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
annotation_type!
hQTL
annotation_type_category!
HiC
files.file_type!
bed bed9
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR834AMF
released
Annotation file set
: Candidate regulatory elements for BSS00491 HAP-1 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR765USM
released
Annotation file set
: Target gene predictions for BSS00491 HAP-1 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR930MDC
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE HAP-1
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR956RSG
released
Annotation file set
: Histone modifications annotation for Blood HAP1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR497ETD
released
Annotation file set
: Binding sites annotation for Blood HAP1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR155AOX
released
Annotation file set
: enhancer-gene predicton of HAP1 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR934MXE
released
Annotation file set
: Accessible chromatin annotation for Blood HAP1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP