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Schema
Citing CMDGA
Clear Filters
Annotation type
5
accessible chromatin
2
gene expression
Annotation Category
5
cis-regulatory elements
2
Gene expression levels
Annotation type Category
5
snATAC-seq
2
snRNA-seq
Available data
5
bed bed3+
3
bigWig
File set status
7
released
Genome assembly (visualization)
7
hg19
3
GRCh38
Organism
7
Homo sapiens
Biosample type
7
primary cell
Biosample term
7
skeletal muscle fiber
6
skeletal muscle satellite cell
6
type I muscle cell
6
type II muscle cell
Organ
7
musculature of body
Date released
4
February, 2024
3
November, 2021
Software used
5
macs
2
deeptools
2
r
2
samtools
2
umitools
Lab
4
Stephen Parker, UMich
3
Bing Ren, UCSD
Project
4
AMP
3
ENCODE
RFA
4
AMP2
3
ENCODE3
AMP
annotation_type!
hQTL
award.rfa!
AMP
biosample_term_name!
muscle of arm
Showing 7 of 7 results
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Download
FileSet
DSR584RYA
released
Annotation file set
: Accessible chromatin annotation of Fetal Skeletal Myocyte 3 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR222MBS
released
Annotation file set
: Accessible chromatin annotation of Fetal Skeletal Myocyte 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR958BVX
released
Annotation file set
: Accessible chromatin annotation of Fetal Skeletal Myocyte 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR887UQH
released
Annotation file set
: Cell type chromatin broad peaks and bw of neuromuscular junction from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR353GUO
released
Annotation file set
: Cell type chromatin broad peaks and bw of muscle fiber mixed from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR040MIE
released
Annotation file set
: Cell type gene expression mean TPM and bw of neuromuscular junction from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR985XYU
released
Annotation file set
: Cell type gene expression mean TPM and bw of muscle fiber mixed from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP