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Schema
Citing CMDGA
Clear Filters
Annotation type
5
accessible chromatin
2
gene expression
1
candidate regulatory elements
Annotation Category
6
cis-regulatory elements
2
Gene expression levels
Annotation type Category
5
snATAC-seq
2
snRNA-seq
1
ChIP-seq
1
DNase-seq
Available data
6
bed bed3+
3
bigWig
File set status
8
released
Genome assembly (visualization)
8
hg19
3
GRCh38
Organism
8
Homo sapiens
Biosample type
7
primary cell
1
tissue
Biosample term
66
muscle of arm
58
muscle of leg
54
muscle of back
20
psoas muscle
18
gastrocnemius medialis
17
muscle of trunk
16
skeletal muscle tissue
13
skeletal muscle satellite cell
11
esophagus muscularis mucosa
9
stomach smooth muscle
7
LHCN-M2
7
gastroesophageal sphincter
7
skeletal muscle fiber
7
type I muscle cell
7
type II muscle cell
5
A673
5
SJCRH30
5
gastrocnemius medialis(Muscle - Skeletal)
5
left ventricle myocardium
5
myotube
5
skeletal muscle cell
4
rectum smooth muscle tissue
2
cardiac muscle myoblast
2
forelimb muscle
2
respiratory system smooth muscle
2
skeletal muscle
2
somatic muscle myotube
1
hindlimb muscle
1
aortic smooth muscle cell
1
esophagus - gastroesophageal junction
1
esophagus - muscularis
1
hindlimb muscle
1
rectal smooth muscle tissue
1
smooth muscle tissue
Organ
8
musculature of body
1
limb
Life stage
1
embryonic
Date released
4
February, 2024
3
November, 2021
1
February, 2021
Software used
5
macs
2
deeptools
deltasvm
2
r
2
samtools
2
umitools
1
encode-ccres
Lab
4
Stephen Parker, UMich
3
Bing Ren, UCSD
1
AMP-T2D consortium
Project
5
AMP
3
ENCODE
RFA
4
AMP2
3
ENCODE3
1
AMP
annotation_type!
hQTL
software_used.software.name!
deltasvm
Showing 8 of 8 results
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Download
FileSet
DSR584RYA
released
Annotation file set
: Accessible chromatin annotation of Fetal Skeletal Myocyte 3 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR222MBS
released
Annotation file set
: Accessible chromatin annotation of Fetal Skeletal Myocyte 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR958BVX
released
Annotation file set
: Accessible chromatin annotation of Fetal Skeletal Myocyte 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR456DBE
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE hindlimb muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR887UQH
released
Annotation file set
: Cell type chromatin broad peaks and bw of neuromuscular junction from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR353GUO
released
Annotation file set
: Cell type chromatin broad peaks and bw of muscle fiber mixed from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR040MIE
released
Annotation file set
: Cell type gene expression mean TPM and bw of neuromuscular junction from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR985XYU
released
Annotation file set
: Cell type gene expression mean TPM and bw of muscle fiber mixed from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP