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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
accessible chromatin
1
chromatin state
1
target gene predictions
variant allelic effects
Annotation Category
4
cis-regulatory elements
1
Target gene links
Annotation type Category
4
ChIP-seq
4
DNase-seq
Available data
4
bed bed3+
1
bed bed9
1
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
2
GRCh38
Organism
5
Homo sapiens
Biosample type
5
tissue
Biosample term
87
heart
85
stomach
78
kidney
69
brain
68
lung
66
muscle of arm
63
small intestine
62
adrenal gland
58
muscle of leg
58
placenta
55
large intestine
54
muscle of back
52
left lung
47
liver
47
thymus
45
right lung
42
islet of Langerhans
41
right kidney
39
renal cortex interstitium
39
renal pelvis
38
retina
36
left kidney
34
spleen
31
adipose tissue
31
heart left ventricle
31
spinal cord
23
body of pancreas
23
sigmoid colon
23
tibial nerve
21
ovary
20
caudate nucleus
20
pancreas
20
pigmented layer of retina
20
psoas muscle
20
subcutaneous adipose tissue
19
coronary artery
19
thyroid gland
19
transverse colon
18
gastrocnemius medialis
18
heart right ventricle
18
omental fat pad
17
muscle of trunk
17
right atrium auricular region
17
substantia nigra
17
testis
17
tibial artery
16
chorionic villus
15
ascending aorta
15
cerebellum
15
endocrine pancreas
15
frontal cortex
15
layer of hippocampus
15
skeletal muscle tissue
15
upper lobe of left lung
14
Peyer's patch
13
aorta
13
putamen
13
temporal lobe
12
Ammon's horn
12
prostate gland
11
breast epithelium
11
esophagus muscularis mucosa
11
esophagus squamous epithelium
11
left cardiac atrium
11
left renal cortex interstitium
11
left renal pelvis
11
right renal pelvis
11
trophoblast
10
angular gyrus
10
chorion membrane
10
esophagus
10
lower leg skin
10
right renal cortex interstitium
10
thoracic aorta
10
vagina
9
cingulate gyrus
9
colonic mucosa
9
duodenal mucosa
9
eye
9
mucosa of rectum
9
parathyroid adenoma
9
right lobe of liver
9
stomach smooth muscle
9
tongue
9
uterus
8
limb
8
muscle layer of colon
8
muscle layer of duodenum
8
right cardiac atrium
8
urinary bladder
7
gastroesophageal sphincter
6
Brodmann (1909) area 46
6
amygdala
6
anterior cingulate cortex
6
globus pallidus
6
hypothalamus
6
midbrain
6
nucleus accumbens
6
occipital lobe
6
skin of body
6
subcutaneous abdominal adipose tissue
5
C1 segment of cervical spinal cord
5
cerebellar cortex
5
cerebellum (Hemisphere)
5
gastrocnemius medialis(Muscle - Skeletal)
5
germinal matrix
5
left ventricle myocardium
5
medulla oblongata
5
middle frontal gyrus
5
pons
5
superior temporal gyrus
5
umbilical cord
4
amnion
4
bone tissue
4
cartilage tissue
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
embryonic facial prominence
4
femur
4
inferior parietal cortex
4
mucosa of stomach
4
rectum smooth muscle tissue
4
visceral abdominal adipose tissue
3
arm bone
3
cortex of kidney
3
dorsolateral prefrontal cortex
3
germinal center
3
leg bone
3
suprapubic skin
2
blood
2
chorion
2
fallopian tube
2
forelimb muscle
2
middle frontal area 46
2
minor salivary gland
2
pancreatic ductal cell
2
pancreatic stellate cell
2
placental basal plate
2
prefrontal cortex
2
skeletal muscle
2
tissue
1
hindlimb muscle
1
Pancreatic islets
1
Schwann cell
1
abdominal aorta artery
1
aorta wall
1
aortic valve
1
beige adipocyte
1
bladder
1
bladder (urinary bladder)
1
breast
1
breast - mammary tissue
1
breast carcinoma
1
caput epididymis
1
cardiac ventricle
1
cerebellar hemisphere
1
cerebrospinal fluid
1
cervix - ectocervix
1
cervix - endocervix
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
cortex
1
crypt of Lieberkuhn
1
diencephalon
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
endometrium
1
endometrium cancer
1
endothelial cell
1
epididymis
1
esophagus - gastroesophageal junction
1
esophagus - mucosa
1
esophagus - muscularis
1
esophagus mucosa
1
fetal heart
1
first pancreatic bud
1
gastric (mucosa of stomach)
1
glomerular epithelium
1
hindlimb muscle
1
kidney - cortex
1
kidney - medulla
1
kidney epithelium
1
left leg bone
1
mammary gland
1
medulloblastoma
1
metanephros
1
mid-frontal lobe
1
mitral valve
1
nephron tubule
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic acinar cell
1
parietal lobe
1
pituitary
1
pituitary gland
1
prostate
Organ
5
brain
Life stage
5
adult
Date released
3
September, 2022
1
February, 2021
1
January, 2020
Software used
2
r
1
chromhmm
1
encode-ccres
1
macs
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
annotation_type!
histone modifications
variant allelic effects
Showing 5 of 5 results
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Download
FileSet
DSR927CWG
released
Annotation file set
: Candidate regulatory elements for BSS01273 middle frontal gyrus from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR313QBI
released
Annotation file set
: Target gene predictions for BSS01273 middle frontal gyrus from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR125MTD
released
Annotation file set
: Chromatin states for BSS01273 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR955VGP
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE middle frontal gyrus
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR012WIT
released
Annotation file set
: Accessible chromatin annotation of brain middle frontal gyrus from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP